Analysis of interatomic Contacts of Structural Units in PDB entry:
1KM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KM0 entry

There are 4 chains in PDB entry 1KM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 9ALA 245
B
 VAL 11ILE 222
C
 MET 9ALA 243
D
 MET 9ILE 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 1KM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
23 35Right-handed alpha
Helix 3
3
A
45 52Right-handed alpha
Helix 4
4
A
53 64Right-handed alpha
Helix 5
5
A
76 90Right-handed alpha
Helix 6
6
A
102 117Right-handed alpha
Helix 7
7
A
128 133Right-handed 310
Helix 8
8
A
134 150Right-handed alpha
Helix 9
9
A
160 172Right-handed alpha
Helix 10
10
A
188 193Right-handed alpha
Helix 11
11
A
202 207Right-handed alpha
Helix 12
12
A
210 224Right-handed alpha
Helix 13
13
A
230 245Right-handed alpha
Helix 14
14
B
23 34Right-handed alpha
Helix 15
15
B
45 52Right-handed alpha
Helix 16
16
B
53 64Right-handed alpha
Helix 17
17
B
76 90Right-handed alpha
Helix 18
18
B
102 117Right-handed alpha
Helix 19
19
B
128 133Right-handed 310
Helix 20
20
B
134 150Right-handed alpha
Helix 21
21
B
160 172Right-handed alpha
Helix 22
22
B
188 193Right-handed alpha
Helix 23
23
B
202 207Right-handed alpha
Helix 24
24
B
210 222Right-handed alpha
Helix 25
25
C
11 13Right-handed 310
Helix 26
26
C
23 35Right-handed alpha
Helix 27
27
C
45 52Right-handed alpha
Helix 28
28
C
53 63Right-handed alpha
Helix 29
29
C
76 90Right-handed alpha
Helix 30
30
C
102 117Right-handed alpha
Helix 31
31
C
128 133Right-handed 310
Helix 32
32
C
134 150Right-handed alpha
Helix 33
33
C
160 172Right-handed alpha
Helix 34
34
C
188 196Right-handed alpha
Helix 35
35
C
202 207Right-handed alpha
Helix 36
36
C
210 224Right-handed alpha
Helix 37
37
C
230 243Right-handed alpha
Helix 38
38
D
11 13Right-handed 310
Helix 39
39
D
23 35Right-handed alpha
Helix 40
40
D
45 52Right-handed alpha
Helix 41
41
D
53 64Right-handed alpha
Helix 42
42
D
76 90Right-handed alpha
Helix 43
43
D
102 117Right-handed alpha
Helix 44
44
D
128 133Right-handed 310
Helix 45
45
D
134 150Right-handed alpha
Helix 46
46
D
160 172Right-handed alpha
Helix 47
47
D
188 193Right-handed alpha
Helix 48
48
D
202 207Right-handed alpha
Helix 49
49
D
210 222Right-handed alpha
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There are 4 sheets in PDB entry 1KM0. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
40 44parallel
Strand 3
A
66 73parallel
Strand 4
A
94 98parallel
Strand 5
A
119 123parallel
Strand 6
A
153 155parallel
Strand 7
A
176 179parallel
Strand 8
A
198 201parallel
Strand 9
A
15 19parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
40 44parallel
Strand 3
B
66 73parallel
Strand 4
B
94 98parallel
Strand 5
B
119 123parallel
Strand 6
B
153 155parallel
Strand 7
B
176 179parallel
Strand 8
B
198 201parallel
Strand 9
B
15 19parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 19first strand
Strand 2
C
40 44parallel
Strand 3
C
66 73parallel
Strand 4
C
94 98parallel
Strand 5
C
119 123parallel
Strand 6
C
153 155parallel
Strand 7
C
176 179parallel
Strand 8
C
198 201parallel
Strand 9
C
15 19parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
40 44parallel
Strand 3
D
66 73parallel
Strand 4
D
94 98parallel
Strand 5
D
119 123parallel
Strand 6
D
153 155parallel
Strand 7
D
176 179parallel
Strand 8
D
198 201parallel
Strand 9
D
15 19parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il