Analysis of interatomic Contacts of Structural Units in PDB entry:
1KMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KMI entry

There are 2 chains in PDB entry 1KMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 ALA 2MET 129
Z
 SER 5GLY 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1KMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
Y
14 28Right-handed alpha
Helix 2
2
Y
38 49Right-handed alpha
Helix 3
3
Y
64 75Right-handed alpha
Helix 4
4
Y
91 101Right-handed alpha
Helix 5
5
Y
112 127Right-handed alpha
Helix 6
6
Z
13 36Right-handed alpha
Helix 7
7
Z
36 44Right-handed alpha
Helix 8
8
Z
47 55Right-handed alpha
Helix 9
9
Z
57 65Right-handed alpha
Helix 10
10
Z
67 98Right-handed alpha
Helix 11
11
Z
103 139Right-handed alpha
Helix 12
12
Z
140 162Right-handed alpha
Helix 13
13
Z
203 213Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1KMI.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
33 36first strand
Strand 2
Y
8 11parallel
Strand 3
Y
53 56parallel
Strand 4
Y
83 87parallel
Strand 5
Y
105 108parallel
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