Analysis of interatomic Contacts of Structural Units in PDB entry:
1KMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KMO entry

There is 1 chain in PDB entry 1KMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 81PHE 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1KMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 99Right-handed alpha
Helix 2
2
A
110 116Right-handed 310
Helix 3
3
A
119 125Right-handed alpha
Helix 4
4
A
136 140Right-handed 310
Helix 5
5
A
154 158Right-handed 310
Helix 6
6
A
185 187Right-handed 310
Helix 7
7
A
206 209Right-handed 310
Helix 8
8
A
315 322Right-handed alpha
Helix 9
9
A
519 521Right-handed 310
Helix 10
10
A
522 529Right-handed alpha
Helix 11
11
A
595 597Right-handed 310
Helix 12
12
A
598 602Right-handed 310
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There are 4 sheets in PDB entry 1KMO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
148 149anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
161 164anti-parallel
Strand 3
A
211 216parallel
Strand 4
A
189 195anti-parallel
Strand 5
A
104 108anti-parallel
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There are 27 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 233first strand
Strand 2
A
243 253anti-parallel
Strand 3
A
258 269anti-parallel
Strand 4
A
278 289anti-parallel
Strand 5
A
295 309anti-parallel
Strand 6
A
332 346anti-parallel
Strand 7
A
352 371anti-parallel
Strand 8
A
374 377anti-parallel
Strand 9
A
400 423anti-parallel
Strand 10
A
380 397anti-parallel
Strand 11
A
352 371anti-parallel
Strand 12
A
380 397anti-parallel
Strand 13
A
400 423anti-parallel
Strand 14
A
436 457anti-parallel
Strand 15
A
460 477anti-parallel
Strand 16
A
483 502anti-parallel
Strand 17
A
505 516anti-parallel
Strand 18
A
535 547anti-parallel
Strand 19
A
551 565anti-parallel
Strand 20
A
579 593anti-parallel
Strand 21
A
604 617anti-parallel
Strand 22
A
634 642anti-parallel
Strand 23
A
647 656anti-parallel
Strand 24
A
681 691anti-parallel
Strand 25
A
700 706anti-parallel
Strand 26
A
732 741anti-parallel
Strand 27
A
224 233anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 717first strand
Strand 2
A
724 727anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il