Analysis of interatomic Contacts of Structural Units in PDB entry:
1KMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KMW entry

There are 2 chains in PDB entry 1KMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 ARG 114GLU 383
C
 LYS 8PHE 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1KMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
R
120 134Right-handed alpha
Helix 2
2
R
135 138Right-handed 310
Helix 3
3
R
141 152Right-handed alpha
Helix 4
4
R
205 210Right-handed alpha
Helix 5
5
R
231 237Right-handed alpha
Helix 6
6
R
237 254Right-handed alpha
Helix 7
7
R
256 261Right-handed alpha
Helix 8
8
R
263 273Right-handed alpha
Helix 9
9
R
335 340Right-handed alpha
Helix 10
10
R
361 368Right-handed alpha
Helix 11
11
R
371 380Right-handed alpha
Helix 12
12
C
10 31Right-handed alpha
Helix 13
13
C
39 41Right-handed 310
Helix 14
14
C
64 66Right-handed 310
Helix 15
15
C
76 83Right-handed alpha
Helix 16
16
C
84 96Right-handed alpha
Helix 17
17
C
127 134Right-handed alpha
Helix 18
18
C
139 158Right-handed alpha
Helix 19
19
C
168 170Right-handed 310
Helix 20
20
C
206 211Right-handed alpha
Helix 21
21
C
218 234Right-handed alpha
Helix 22
22
C
242 252Right-handed alpha
Helix 23
23
C
262 273Right-handed alpha
Helix 24
24
C
276 280Right-handed 310
Helix 25
25
C
288 293Right-handed alpha
Helix 26
26
C
296 300Right-handed 310
Helix 27
27
C
301 307Right-handed alpha
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There are 5 sheets in PDB entry 1KMW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
153 154first strand
Strand 2
R
217 230anti-parallel
Strand 3
R
172 184anti-parallel
Strand 4
R
202 203anti-parallel
Strand 5
R
172 184anti-parallel
Strand 6
R
194 195anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
275 278first strand
Strand 2
R
347 360anti-parallel
Strand 3
R
284 286anti-parallel
Strand 4
R
347 360anti-parallel
Strand 5
R
294 307anti-parallel
Strand 6
R
322 328anti-parallel
Strand 7
R
294 307anti-parallel
Strand 8
R
332 333anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 52first strand
Strand 2
C
55 62anti-parallel
Strand 3
C
68 75anti-parallel
Strand 4
C
115 120anti-parallel
Strand 5
C
106 111anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
189 190anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
180 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il