Analysis of interatomic Contacts of Structural Units in PDB entry:
1KNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KNY entry

There are 2 chains in PDB entry 1KNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 253
B
 MET 1PHE 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1KNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 30Right-handed alpha
Helix 2
2
A
38 42Right-handed alpha
Helix 3
3
A
82 90Right-handed alpha
Helix 4
4
A
96 103Right-handed alpha
Helix 5
5
A
115 124Right-handed alpha
Helix 6
6
A
128 141Right-handed alpha
Helix 7
7
A
143 156Right-handed alpha
Helix 8
8
A
162 181Right-handed alpha
Helix 9
9
A
191 197Right-handed alpha
Helix 10
10
A
205 214Right-handed alpha
Helix 11
11
A
220 241Right-handed alpha
Helix 12
12
B
9 30Right-handed alpha
Helix 13
13
B
38 42Right-handed alpha
Helix 14
14
B
82 89Right-handed alpha
Helix 15
15
B
96 103Right-handed alpha
Helix 16
16
B
115 124Right-handed alpha
Helix 17
17
B
128 141Right-handed alpha
Helix 18
18
B
143 156Right-handed alpha
Helix 19
19
B
159 180Right-handed 310
Helix 20
20
B
188 197Right-handed 310
Helix 21
21
B
205 214Right-handed alpha
Helix 22
22
B
220 241Right-handed alpha
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There are 2 sheets in PDB entry 1KNY. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 69first strand
Strand 2
A
74 81anti-parallel
Strand 3
A
51 57parallel
Strand 4
A
31 37anti-parallel
Strand 5
A
107 111anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 69first strand
Strand 2
B
74 81anti-parallel
Strand 3
B
51 57parallel
Strand 4
B
31 37anti-parallel
Strand 5
B
107 111anti-parallel
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