Analysis of interatomic Contacts of Structural Units in PDB entry:
1KO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KO7 entry

There are 2 chains in PDB entry 1KO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 298
B
 MET 1ASN 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1KO7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
34 39Right-handed alpha
Helix 4
4
A
54 64Right-handed alpha
Helix 5
5
A
65 70Right-handed alpha
Helix 6
6
A
71 77Right-handed alpha
Helix 7
7
A
93 103Right-handed alpha
Helix 8
8
A
113 129Right-handed alpha
Helix 9
9
A
156 167Right-handed alpha
Helix 10
10
A
192 196Right-handed 310
Helix 11
11
A
209 214Right-handed alpha
Helix 12
12
A
215 218Right-handed 310
Helix 13
13
A
268 285Right-handed alpha
Helix 14
14
A
288 298Right-handed alpha
Helix 15
15
B
3 12Right-handed alpha
Helix 16
16
B
18 22Right-handed 310
Helix 17
17
B
34 39Right-handed alpha
Helix 18
18
B
54 62Right-handed alpha
Helix 19
19
B
65 70Right-handed alpha
Helix 20
20
B
71 77Right-handed alpha
Helix 21
21
B
93 103Right-handed alpha
Helix 22
22
B
113 129Right-handed alpha
Helix 23
23
B
156 167Right-handed alpha
Helix 24
24
B
192 196Right-handed 310
Helix 25
25
B
209 214Right-handed alpha
Helix 26
26
B
215 218Right-handed 310
Helix 27
27
B
268 285Right-handed alpha
Helix 28
28
B
288 297Right-handed alpha
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There are 8 sheets in PDB entry 1KO7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
107 109anti-parallel
Strand 3
A
84 86parallel
Strand 4
A
50 53parallel
Strand 5
A
31 32parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 136first strand
Strand 2
A
176 181anti-parallel
Strand 3
A
187 190anti-parallel
Strand 4
A
221 223anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
145 151anti-parallel
Strand 4
A
226 231parallel
Strand 5
A
254 262parallel
Strand 6
A
247 251anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
205 208anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
107 109anti-parallel
Strand 3
B
84 86parallel
Strand 4
B
50 53parallel
Strand 5
B
31 32parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 136first strand
Strand 2
B
176 183anti-parallel
Strand 3
B
186 190anti-parallel
Strand 4
B
221 223anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 173first strand
Strand 2
B
138 142anti-parallel
Strand 3
B
145 151anti-parallel
Strand 4
B
226 231parallel
Strand 5
B
254 262parallel
Strand 6
B
247 251anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
205 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il