Analysis of interatomic Contacts of Structural Units in PDB entry:
1KOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KOG entry

There are 16 chains in PDB entry 1KOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
G 69 C 105
J
G 69 C 105
K
G 69 C 105
L
G 69 C 105
M
G 69 C 105
N
G 69 C 105
O
G 69 C 105
P
G 69 C 105
A
ARG 242GLU 642
B
ARG 242GLU 642
C
ARG 242GLU 642
D
ARG 242GLU 642
E
ARG 242GLU 642
F
ARG 242GLU 642
G
ARG 242GLU 642
H
ARG 242GLU 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are136 helices in PDB entry 1KOG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
243 252Right-handed alpha
Helix 2
2
A
267 289Right-handed alpha
Helix 3
3
A
301 308Right-handed alpha
Helix 4
4
A
309 312Right-handed 310
Helix 5
5
A
333 343Right-handed alpha
Helix 6
6
A
349 351Right-handed 310
Helix 7
7
A
366 370Right-handed 310
Helix 8
8
A
392 409Right-handed alpha
Helix 9
9
A
410 412Right-handed 310
Helix 10
10
A
430 448Right-handed alpha
Helix 11
11
A
488 493Right-handed alpha
Helix 12
12
A
517 530Right-handed alpha
Helix 13
13
A
534 538Right-handed 310
Helix 14
14
A
551 565Right-handed alpha
Helix 15
15
A
577 587Right-handed alpha
Helix 16
16
A
597 602Right-handed alpha
Helix 17
17
A
621 634Right-handed alpha
Helix 18
18
B
243 251Right-handed alpha
Helix 19
19
B
267 288Right-handed alpha
Helix 20
20
B
301 308Right-handed alpha
Helix 21
21
B
309 312Right-handed 310
Helix 22
22
B
333 343Right-handed alpha
Helix 23
23
B
349 351Right-handed 310
Helix 24
24
B
366 370Right-handed 310
Helix 25
25
B
392 409Right-handed alpha
Helix 26
26
B
410 412Right-handed 310
Helix 27
27
B
430 448Right-handed alpha
Helix 28
28
B
488 493Right-handed alpha
Helix 29
29
B
517 530Right-handed alpha
Helix 30
30
B
534 538Right-handed 310
Helix 31
31
B
551 565Right-handed alpha
Helix 32
32
B
577 587Right-handed alpha
Helix 33
33
B
597 602Right-handed alpha
Helix 34
34
B
621 634Right-handed alpha
Helix 35
35
C
243 252Right-handed alpha
Helix 36
36
C
267 289Right-handed alpha
Helix 37
37
C
301 308Right-handed alpha
Helix 38
38
C
309 312Right-handed 310
Helix 39
39
C
333 343Right-handed alpha
Helix 40
40
C
349 351Right-handed 310
Helix 41
41
C
366 370Right-handed 310
Helix 42
42
C
392 409Right-handed alpha
Helix 43
43
C
410 412Right-handed 310
Helix 44
44
C
430 448Right-handed alpha
Helix 45
45
C
488 493Right-handed alpha
Helix 46
46
C
517 530Right-handed alpha
Helix 47
47
C
534 538Right-handed 310
Helix 48
48
C
551 565Right-handed alpha
Helix 49
49
C
577 587Right-handed alpha
Helix 50
50
C
597 602Right-handed alpha
Helix 51
51
C
621 634Right-handed alpha
Helix 52
52
D
243 252Right-handed alpha
Helix 53
53
D
267 288Right-handed alpha
Helix 54
54
D
301 308Right-handed alpha
Helix 55
55
D
309 312Right-handed 310
Helix 56
56
D
333 343Right-handed alpha
Helix 57
57
D
349 351Right-handed 310
Helix 58
58
D
366 370Right-handed 310
Helix 59
59
D
392 409Right-handed alpha
Helix 60
60
D
410 412Right-handed 310
Helix 61
61
D
430 448Right-handed alpha
Helix 62
62
D
488 493Right-handed alpha
Helix 63
63
D
517 530Right-handed alpha
Helix 64
64
D
534 538Right-handed 310
Helix 65
65
D
551 565Right-handed alpha
Helix 66
66
D
577 587Right-handed alpha
Helix 67
67
D
597 602Right-handed alpha
Helix 68
68
D
621 634Right-handed alpha
Helix 69
69
E
243 251Right-handed alpha
Helix 70
70
E
267 288Right-handed alpha
Helix 71
71
E
301 308Right-handed alpha
Helix 72
72
E
309 312Right-handed 310
Helix 73
73
E
333 343Right-handed alpha
Helix 74
74
E
349 351Right-handed 310
Helix 75
75
E
366 370Right-handed 310
Helix 76
76
E
392 409Right-handed alpha
Helix 77
77
E
410 412Right-handed 310
Helix 78
78
E
430 448Right-handed alpha
Helix 79
79
E
488 493Right-handed alpha
Helix 80
80
E
517 530Right-handed alpha
Helix 81
81
E
534 538Right-handed 310
Helix 82
82
E
551 565Right-handed alpha
Helix 83
83
E
577 587Right-handed alpha
Helix 84
84
E
597 602Right-handed alpha
Helix 85
85
E
621 634Right-handed alpha
Helix 86
86
F
243 252Right-handed alpha
Helix 87
87
F
267 289Right-handed alpha
Helix 88
88
F
301 308Right-handed alpha
Helix 89
89
F
309 312Right-handed 310
Helix 90
90
F
333 343Right-handed alpha
Helix 91
91
F
349 351Right-handed 310
Helix 92
92
F
366 370Right-handed 310
Helix 93
93
F
392 409Right-handed alpha
Helix 94
94
F
410 412Right-handed 310
Helix 95
95
F
430 448Right-handed alpha
Helix 96
96
F
488 493Right-handed alpha
Helix 97
97
F
517 530Right-handed alpha
Helix 98
98
F
534 538Right-handed 310
Helix 99
99
F
551 565Right-handed alpha
Helix 100
100
F
577 587Right-handed alpha
Helix 101
101
F
597 602Right-handed alpha
Helix 102
102
F
621 634Right-handed alpha
Helix 103
103
G
243 252Right-handed alpha
Helix 104
104
G
267 289Right-handed alpha
Helix 105
105
G
301 308Right-handed alpha
Helix 106
106
G
309 312Right-handed 310
Helix 107
107
G
333 343Right-handed alpha
Helix 108
108
G
349 351Right-handed 310
Helix 109
109
G
366 370Right-handed 310
Helix 110
110
G
392 409Right-handed alpha
Helix 111
111
G
410 412Right-handed 310
Helix 112
112
G
430 448Right-handed alpha
Helix 113
113
G
488 493Right-handed alpha
Helix 114
114
G
517 528Right-handed alpha
Helix 115
115
G
534 538Right-handed 310
Helix 116
116
G
551 565Right-handed alpha
Helix 117
117
G
577 587Right-handed alpha
Helix 118
118
G
597 602Right-handed alpha
Helix 119
119
G
621 634Right-handed alpha
Helix 120
120
H
243 252Right-handed alpha
Helix 121
121
H
267 289Right-handed alpha
Helix 122
122
H
301 308Right-handed alpha
Helix 123
123
H
309 312Right-handed 310
Helix 124
124
H
333 343Right-handed alpha
Helix 125
125
H
349 351Right-handed 310
Helix 126
126
H
366 370Right-handed 310
Helix 127
127
H
392 409Right-handed alpha
Helix 128
128
H
410 412Right-handed 310
Helix 129
129
H
430 448Right-handed alpha
Helix 130
130
H
488 493Right-handed alpha
Helix 131
131
H
517 530Right-handed alpha
Helix 132
132
H
534 538Right-handed 310
Helix 133
133
H
551 565Right-handed alpha
Helix 134
134
H
577 587Right-handed alpha
Helix 135
135
H
597 602Right-handed alpha
Helix 136
136
H
621 634Right-handed alpha
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There are 44 sheets in PDB entry 1KOG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
291 292first strand
Strand 2
A
353 356parallel
Strand 3
A
384 388anti-parallel
Strand 4
A
508 513anti-parallel
Strand 5
A
477 486anti-parallel
Strand 6
A
465 471anti-parallel
Strand 7
A
416 421anti-parallel
Strand 8
A
452 453parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
298 300first strand
Strand 2
A
326 329anti-parallel
Strand 3
A
318 321anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
346 347first strand
Strand 2
A
497 498parallel
Strand 3
A
504 505anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
360 362first strand
Strand 2
A
378 380anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
569 572first strand
Strand 2
A
542 546parallel
Strand 3
A
592 596parallel
Strand 4
A
605 610anti-parallel
Strand 5
A
619 620anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
254 257first strand
Strand 2
B
260 266anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
291 292first strand
Strand 2
B
353 356parallel
Strand 3
B
384 388anti-parallel
Strand 4
B
508 513anti-parallel
Strand 5
B
477 486anti-parallel
Strand 6
B
465 471anti-parallel
Strand 7
B
416 421anti-parallel
Strand 8
B
452 453parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
298 300first strand
Strand 2
B
326 329anti-parallel
Strand 3
B
318 321anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
346 347first strand
Strand 2
B
497 498parallel
Strand 3
B
504 505anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
360 362first strand
Strand 2
B
378 380anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
569 572first strand
Strand 2
B
542 546parallel
Strand 3
B
592 596parallel
Strand 4
B
605 610anti-parallel
Strand 5
B
619 620anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
291 292first strand
Strand 2
C
353 356parallel
Strand 3
C
384 388anti-parallel
Strand 4
C
508 513anti-parallel
Strand 5
C
477 486anti-parallel
Strand 6
C
465 471anti-parallel
Strand 7
C
416 421anti-parallel
Strand 8
C
452 453parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
298 300first strand
Strand 2
C
326 329anti-parallel
Strand 3
C
318 321anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
346 347first strand
Strand 2
C
497 498parallel
Strand 3
C
504 505anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
360 362first strand
Strand 2
C
378 380anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
569 572first strand
Strand 2
C
542 546parallel
Strand 3
C
592 596parallel
Strand 4
C
605 610anti-parallel
Strand 5
C
619 620anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
254 255first strand
Strand 2
D
265 266anti-parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
291 292first strand
Strand 2
D
353 356parallel
Strand 3
D
384 388anti-parallel
Strand 4
D
508 513anti-parallel
Strand 5
D
477 486anti-parallel
Strand 6
D
465 471anti-parallel
Strand 7
D
416 421anti-parallel
Strand 8
D
452 453parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
298 300first strand
Strand 2
D
326 329anti-parallel
Strand 3
D
318 321anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
346 347first strand
Strand 2
D
497 498parallel
Strand 3
D
504 505anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
360 362first strand
Strand 2
D
378 380anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
569 572first strand
Strand 2
D
542 546parallel
Strand 3
D
592 596parallel
Strand 4
D
605 610anti-parallel
Strand 5
D
619 620anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
254 257first strand
Strand 2
E
260 266anti-parallel
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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
291 292first strand
Strand 2
E
353 356parallel
Strand 3
E
384 388anti-parallel
Strand 4
E
508 513anti-parallel
Strand 5
E
477 486anti-parallel
Strand 6
E
465 471anti-parallel
Strand 7
E
416 421anti-parallel
Strand 8
E
452 453parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
298 300first strand
Strand 2
E
326 329anti-parallel
Strand 3
E
318 321anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
346 347first strand
Strand 2
E
497 498parallel
Strand 3
E
504 505anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
360 362first strand
Strand 2
E
378 380anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
569 572first strand
Strand 2
E
542 546parallel
Strand 3
E
592 596parallel
Strand 4
E
605 610anti-parallel
Strand 5
E
619 620anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
291 292first strand
Strand 2
F
353 356parallel
Strand 3
F
384 388anti-parallel
Strand 4
F
508 513anti-parallel
Strand 5
F
477 486anti-parallel
Strand 6
F
465 471anti-parallel
Strand 7
F
417 421anti-parallel
Strand 8
F
452 453parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
298 300first strand
Strand 2
F
326 329anti-parallel
Strand 3
F
318 321anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
346 347first strand
Strand 2
F
497 498parallel
Strand 3
F
504 505anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
360 362first strand
Strand 2
F
378 380anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
569 572first strand
Strand 2
F
542 546parallel
Strand 3
F
592 596parallel
Strand 4
F
605 610anti-parallel
Strand 5
F
619 620anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
256 257first strand
Strand 2
G
260 264anti-parallel
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There are 8 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
291 292first strand
Strand 2
G
353 356parallel
Strand 3
G
384 388anti-parallel
Strand 4
G
508 513anti-parallel
Strand 5
G
477 486anti-parallel
Strand 6
G
465 471anti-parallel
Strand 7
G
416 421anti-parallel
Strand 8
G
452 453parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
298 300first strand
Strand 2
G
326 329anti-parallel
Strand 3
G
318 321anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
346 347first strand
Strand 2
G
497 498parallel
Strand 3
G
504 505anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
360 362first strand
Strand 2
G
378 380anti-parallel
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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
569 572first strand
Strand 2
G
542 546parallel
Strand 3
G
592 596parallel
Strand 4
G
605 610anti-parallel
Strand 5
G
619 620anti-parallel
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There are 8 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
291 292first strand
Strand 2
H
353 356parallel
Strand 3
H
384 388anti-parallel
Strand 4
H
508 513anti-parallel
Strand 5
H
477 486anti-parallel
Strand 6
H
465 471anti-parallel
Strand 7
H
416 421anti-parallel
Strand 8
H
452 453parallel
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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
298 300first strand
Strand 2
H
326 329anti-parallel
Strand 3
H
318 321anti-parallel
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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
346 347first strand
Strand 2
H
497 498parallel
Strand 3
H
504 505anti-parallel
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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
360 362first strand
Strand 2
H
378 380anti-parallel
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There are 5 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
569 572first strand
Strand 2
H
542 546parallel
Strand 3
H
592 596parallel
Strand 4
H
605 610anti-parallel
Strand 5
H
619 620anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il