Analysis of interatomic Contacts of Structural Units in PDB entry:
1KOG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1KOG entry

There are 16 chains in PDB entry 1KOG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	G 69	C 105
J	G 69	C 105
K	G 69	C 105
L	G 69	C 105
M	G 69	C 105
N	G 69	C 105
O	G 69	C 105
P	G 69	C 105
A	ARG 242	GLU 642
B	ARG 242	GLU 642
C	ARG 242	GLU 642
D	ARG 242	GLU 642
E	ARG 242	GLU 642
F	ARG 242	GLU 642
G	ARG 242	GLU 642
H	ARG 242	GLU 642

There are136 helices in PDB entry 1KOG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	243	252	Right-handed alpha
Helix 2	2	A	267	289	Right-handed alpha
Helix 3	3	A	301	308	Right-handed alpha
Helix 4	4	A	309	312	Right-handed 310
Helix 5	5	A	333	343	Right-handed alpha
Helix 6	6	A	349	351	Right-handed 310
Helix 7	7	A	366	370	Right-handed 310
Helix 8	8	A	392	409	Right-handed alpha
Helix 9	9	A	410	412	Right-handed 310
Helix 10	10	A	430	448	Right-handed alpha
Helix 11	11	A	488	493	Right-handed alpha
Helix 12	12	A	517	530	Right-handed alpha
Helix 13	13	A	534	538	Right-handed 310
Helix 14	14	A	551	565	Right-handed alpha
Helix 15	15	A	577	587	Right-handed alpha
Helix 16	16	A	597	602	Right-handed alpha
Helix 17	17	A	621	634	Right-handed alpha
Helix 18	18	B	243	251	Right-handed alpha
Helix 19	19	B	267	288	Right-handed alpha
Helix 20	20	B	301	308	Right-handed alpha
Helix 21	21	B	309	312	Right-handed 310
Helix 22	22	B	333	343	Right-handed alpha
Helix 23	23	B	349	351	Right-handed 310
Helix 24	24	B	366	370	Right-handed 310
Helix 25	25	B	392	409	Right-handed alpha
Helix 26	26	B	410	412	Right-handed 310
Helix 27	27	B	430	448	Right-handed alpha
Helix 28	28	B	488	493	Right-handed alpha
Helix 29	29	B	517	530	Right-handed alpha
Helix 30	30	B	534	538	Right-handed 310
Helix 31	31	B	551	565	Right-handed alpha
Helix 32	32	B	577	587	Right-handed alpha
Helix 33	33	B	597	602	Right-handed alpha
Helix 34	34	B	621	634	Right-handed alpha
Helix 35	35	C	243	252	Right-handed alpha
Helix 36	36	C	267	289	Right-handed alpha
Helix 37	37	C	301	308	Right-handed alpha
Helix 38	38	C	309	312	Right-handed 310
Helix 39	39	C	333	343	Right-handed alpha
Helix 40	40	C	349	351	Right-handed 310
Helix 41	41	C	366	370	Right-handed 310
Helix 42	42	C	392	409	Right-handed alpha
Helix 43	43	C	410	412	Right-handed 310
Helix 44	44	C	430	448	Right-handed alpha
Helix 45	45	C	488	493	Right-handed alpha
Helix 46	46	C	517	530	Right-handed alpha
Helix 47	47	C	534	538	Right-handed 310
Helix 48	48	C	551	565	Right-handed alpha
Helix 49	49	C	577	587	Right-handed alpha
Helix 50	50	C	597	602	Right-handed alpha
Helix 51	51	C	621	634	Right-handed alpha
Helix 52	52	D	243	252	Right-handed alpha
Helix 53	53	D	267	288	Right-handed alpha
Helix 54	54	D	301	308	Right-handed alpha
Helix 55	55	D	309	312	Right-handed 310
Helix 56	56	D	333	343	Right-handed alpha
Helix 57	57	D	349	351	Right-handed 310
Helix 58	58	D	366	370	Right-handed 310
Helix 59	59	D	392	409	Right-handed alpha
Helix 60	60	D	410	412	Right-handed 310
Helix 61	61	D	430	448	Right-handed alpha
Helix 62	62	D	488	493	Right-handed alpha
Helix 63	63	D	517	530	Right-handed alpha
Helix 64	64	D	534	538	Right-handed 310
Helix 65	65	D	551	565	Right-handed alpha
Helix 66	66	D	577	587	Right-handed alpha
Helix 67	67	D	597	602	Right-handed alpha
Helix 68	68	D	621	634	Right-handed alpha
Helix 69	69	E	243	251	Right-handed alpha
Helix 70	70	E	267	288	Right-handed alpha
Helix 71	71	E	301	308	Right-handed alpha
Helix 72	72	E	309	312	Right-handed 310
Helix 73	73	E	333	343	Right-handed alpha
Helix 74	74	E	349	351	Right-handed 310
Helix 75	75	E	366	370	Right-handed 310
Helix 76	76	E	392	409	Right-handed alpha
Helix 77	77	E	410	412	Right-handed 310
Helix 78	78	E	430	448	Right-handed alpha
Helix 79	79	E	488	493	Right-handed alpha
Helix 80	80	E	517	530	Right-handed alpha
Helix 81	81	E	534	538	Right-handed 310
Helix 82	82	E	551	565	Right-handed alpha
Helix 83	83	E	577	587	Right-handed alpha
Helix 84	84	E	597	602	Right-handed alpha
Helix 85	85	E	621	634	Right-handed alpha
Helix 86	86	F	243	252	Right-handed alpha
Helix 87	87	F	267	289	Right-handed alpha
Helix 88	88	F	301	308	Right-handed alpha
Helix 89	89	F	309	312	Right-handed 310
Helix 90	90	F	333	343	Right-handed alpha
Helix 91	91	F	349	351	Right-handed 310
Helix 92	92	F	366	370	Right-handed 310
Helix 93	93	F	392	409	Right-handed alpha
Helix 94	94	F	410	412	Right-handed 310
Helix 95	95	F	430	448	Right-handed alpha
Helix 96	96	F	488	493	Right-handed alpha
Helix 97	97	F	517	530	Right-handed alpha
Helix 98	98	F	534	538	Right-handed 310
Helix 99	99	F	551	565	Right-handed alpha
Helix 100	100	F	577	587	Right-handed alpha
Helix 101	101	F	597	602	Right-handed alpha
Helix 102	102	F	621	634	Right-handed alpha
Helix 103	103	G	243	252	Right-handed alpha
Helix 104	104	G	267	289	Right-handed alpha
Helix 105	105	G	301	308	Right-handed alpha
Helix 106	106	G	309	312	Right-handed 310
Helix 107	107	G	333	343	Right-handed alpha
Helix 108	108	G	349	351	Right-handed 310
Helix 109	109	G	366	370	Right-handed 310
Helix 110	110	G	392	409	Right-handed alpha
Helix 111	111	G	410	412	Right-handed 310
Helix 112	112	G	430	448	Right-handed alpha
Helix 113	113	G	488	493	Right-handed alpha
Helix 114	114	G	517	528	Right-handed alpha
Helix 115	115	G	534	538	Right-handed 310
Helix 116	116	G	551	565	Right-handed alpha
Helix 117	117	G	577	587	Right-handed alpha
Helix 118	118	G	597	602	Right-handed alpha
Helix 119	119	G	621	634	Right-handed alpha
Helix 120	120	H	243	252	Right-handed alpha
Helix 121	121	H	267	289	Right-handed alpha
Helix 122	122	H	301	308	Right-handed alpha
Helix 123	123	H	309	312	Right-handed 310
Helix 124	124	H	333	343	Right-handed alpha
Helix 125	125	H	349	351	Right-handed 310
Helix 126	126	H	366	370	Right-handed 310
Helix 127	127	H	392	409	Right-handed alpha
Helix 128	128	H	410	412	Right-handed 310
Helix 129	129	H	430	448	Right-handed alpha
Helix 130	130	H	488	493	Right-handed alpha
Helix 131	131	H	517	530	Right-handed alpha
Helix 132	132	H	534	538	Right-handed 310
Helix 133	133	H	551	565	Right-handed alpha
Helix 134	134	H	577	587	Right-handed alpha
Helix 135	135	H	597	602	Right-handed alpha
Helix 136	136	H	621	634	Right-handed alpha

There are 44 sheets in PDB entry 1KOG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	353	356	parallel
Strand 3	A	384	388	anti-parallel
Strand 4	A	508	513	anti-parallel
Strand 5	A	477	486	anti-parallel
Strand 6	A	465	471	anti-parallel
Strand 7	A	416	421	anti-parallel
Strand 8	A	452	453	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	326	329	anti-parallel
Strand 3	A	318	321	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	497	498	parallel
Strand 3	A	504	505	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	362	first strand
Strand 2	A	378	380	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	572	first strand
Strand 2	A	542	546	parallel
Strand 3	A	592	596	parallel
Strand 4	A	605	610	anti-parallel
Strand 5	A	619	620	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	257	first strand
Strand 2	B	260	266	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	353	356	parallel
Strand 3	B	384	388	anti-parallel
Strand 4	B	508	513	anti-parallel
Strand 5	B	477	486	anti-parallel
Strand 6	B	465	471	anti-parallel
Strand 7	B	416	421	anti-parallel
Strand 8	B	452	453	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	326	329	anti-parallel
Strand 3	B	318	321	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	497	498	parallel
Strand 3	B	504	505	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	362	first strand
Strand 2	B	378	380	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	572	first strand
Strand 2	B	542	546	parallel
Strand 3	B	592	596	parallel
Strand 4	B	605	610	anti-parallel
Strand 5	B	619	620	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	353	356	parallel
Strand 3	C	384	388	anti-parallel
Strand 4	C	508	513	anti-parallel
Strand 5	C	477	486	anti-parallel
Strand 6	C	465	471	anti-parallel
Strand 7	C	416	421	anti-parallel
Strand 8	C	452	453	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	326	329	anti-parallel
Strand 3	C	318	321	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	347	first strand
Strand 2	C	497	498	parallel
Strand 3	C	504	505	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	362	first strand
Strand 2	C	378	380	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	569	572	first strand
Strand 2	C	542	546	parallel
Strand 3	C	592	596	parallel
Strand 4	C	605	610	anti-parallel
Strand 5	C	619	620	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	255	first strand
Strand 2	D	265	266	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	292	first strand
Strand 2	D	353	356	parallel
Strand 3	D	384	388	anti-parallel
Strand 4	D	508	513	anti-parallel
Strand 5	D	477	486	anti-parallel
Strand 6	D	465	471	anti-parallel
Strand 7	D	416	421	anti-parallel
Strand 8	D	452	453	parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	326	329	anti-parallel
Strand 3	D	318	321	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	347	first strand
Strand 2	D	497	498	parallel
Strand 3	D	504	505	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	362	first strand
Strand 2	D	378	380	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	569	572	first strand
Strand 2	D	542	546	parallel
Strand 3	D	592	596	parallel
Strand 4	D	605	610	anti-parallel
Strand 5	D	619	620	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	257	first strand
Strand 2	E	260	266	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	292	first strand
Strand 2	E	353	356	parallel
Strand 3	E	384	388	anti-parallel
Strand 4	E	508	513	anti-parallel
Strand 5	E	477	486	anti-parallel
Strand 6	E	465	471	anti-parallel
Strand 7	E	416	421	anti-parallel
Strand 8	E	452	453	parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	300	first strand
Strand 2	E	326	329	anti-parallel
Strand 3	E	318	321	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	347	first strand
Strand 2	E	497	498	parallel
Strand 3	E	504	505	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	360	362	first strand
Strand 2	E	378	380	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	569	572	first strand
Strand 2	E	542	546	parallel
Strand 3	E	592	596	parallel
Strand 4	E	605	610	anti-parallel
Strand 5	E	619	620	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	292	first strand
Strand 2	F	353	356	parallel
Strand 3	F	384	388	anti-parallel
Strand 4	F	508	513	anti-parallel
Strand 5	F	477	486	anti-parallel
Strand 6	F	465	471	anti-parallel
Strand 7	F	417	421	anti-parallel
Strand 8	F	452	453	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	300	first strand
Strand 2	F	326	329	anti-parallel
Strand 3	F	318	321	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	347	first strand
Strand 2	F	497	498	parallel
Strand 3	F	504	505	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	360	362	first strand
Strand 2	F	378	380	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	569	572	first strand
Strand 2	F	542	546	parallel
Strand 3	F	592	596	parallel
Strand 4	F	605	610	anti-parallel
Strand 5	F	619	620	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	256	257	first strand
Strand 2	G	260	264	anti-parallel

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There are 8 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	291	292	first strand
Strand 2	G	353	356	parallel
Strand 3	G	384	388	anti-parallel
Strand 4	G	508	513	anti-parallel
Strand 5	G	477	486	anti-parallel
Strand 6	G	465	471	anti-parallel
Strand 7	G	416	421	anti-parallel
Strand 8	G	452	453	parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	300	first strand
Strand 2	G	326	329	anti-parallel
Strand 3	G	318	321	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	347	first strand
Strand 2	G	497	498	parallel
Strand 3	G	504	505	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	360	362	first strand
Strand 2	G	378	380	anti-parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	569	572	first strand
Strand 2	G	542	546	parallel
Strand 3	G	592	596	parallel
Strand 4	G	605	610	anti-parallel
Strand 5	G	619	620	anti-parallel

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There are 8 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	291	292	first strand
Strand 2	H	353	356	parallel
Strand 3	H	384	388	anti-parallel
Strand 4	H	508	513	anti-parallel
Strand 5	H	477	486	anti-parallel
Strand 6	H	465	471	anti-parallel
Strand 7	H	416	421	anti-parallel
Strand 8	H	452	453	parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	298	300	first strand
Strand 2	H	326	329	anti-parallel
Strand 3	H	318	321	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	346	347	first strand
Strand 2	H	497	498	parallel
Strand 3	H	504	505	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	360	362	first strand
Strand 2	H	378	380	anti-parallel

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There are 5 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	569	572	first strand
Strand 2	H	542	546	parallel
Strand 3	H	592	596	parallel
Strand 4	H	605	610	anti-parallel
Strand 5	H	619	620	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1KOG

Analysis of interatomic Contacts of Structural Units in PDB entry:
1KOG