Analysis of interatomic Contacts of Structural Units in PDB entry:
1KP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KP0 entry

There are 2 chains in PDB entry 1KP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 402
B
 ALA 1ALA 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1KP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 39Right-handed alpha
Helix 2
2
A
47 56Right-handed alpha
Helix 3
3
A
82 84Right-handed 310
Helix 4
4
A
85 91Right-handed alpha
Helix 5
5
A
104 115Right-handed alpha
Helix 6
6
A
128 139Right-handed alpha
Helix 7
7
A
147 156Right-handed alpha
Helix 8
8
A
159 184Right-handed alpha
Helix 9
9
A
189 209Right-handed alpha
Helix 10
10
A
225 229Right-handed 310
Helix 11
11
A
270 291Right-handed alpha
Helix 12
12
A
296 311Right-handed alpha
Helix 13
13
A
313 317Right-handed 310
Helix 14
14
B
20 38Right-handed alpha
Helix 15
15
B
47 56Right-handed alpha
Helix 16
16
B
82 84Right-handed 310
Helix 17
17
B
85 91Right-handed alpha
Helix 18
18
B
104 114Right-handed alpha
Helix 19
19
B
128 139Right-handed alpha
Helix 20
20
B
147 156Right-handed alpha
Helix 21
21
B
159 184Right-handed alpha
Helix 22
22
B
189 207Right-handed alpha
Helix 23
23
B
225 229Right-handed 310
Helix 24
24
B
270 291Right-handed alpha
Helix 25
25
B
296 311Right-handed alpha
Helix 26
26
B
313 317Right-handed 310
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There are 12 sheets in PDB entry 1KP0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
75 80parallel
Strand 4
A
67 70anti-parallel
Strand 5
A
42 45anti-parallel
Strand 6
A
119 122parallel
Strand 7
A
143 146parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
A
213 223anti-parallel
Strand 3
A
244 253anti-parallel
Strand 4
A
256 257anti-parallel
Strand 5
A
326 329anti-parallel
Strand 6
A
332 333anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
A
213 223anti-parallel
Strand 3
A
244 253anti-parallel
Strand 4
A
260 266anti-parallel
Strand 5
A
399 400parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
B
213 214anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
376 381anti-parallel
Strand 3
A
384 387anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 362first strand
Strand 2
A
370 373anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
94 98anti-parallel
Strand 3
B
75 80parallel
Strand 4
B
67 70anti-parallel
Strand 5
B
42 45anti-parallel
Strand 6
B
119 122parallel
Strand 7
B
143 146parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 223first strand
Strand 2
B
244 250anti-parallel
Strand 3
B
260 266anti-parallel
Strand 4
B
399 400parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
256 257anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 329first strand
Strand 2
B
332 333anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 356first strand
Strand 2
B
376 380anti-parallel
Strand 3
B
385 387anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 362first strand
Strand 2
B
370 373anti-parallel
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