Analysis of interatomic Contacts of Structural Units in PDB entry:
1KP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KP5 entry

There are 4 chains in PDB entry 1KP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1PHE 74
A
 VAL 78GLY 245
B
 THR 301PHE 374
B
 VAL 378GLY 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1KP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 19Right-handed 310
Helix 2
2
A
66 71Right-handed 310
Helix 3
3
A
78 82Right-handed 310
Helix 4
4
A
85 91Right-handed 310
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
166 169Right-handed 310
Helix 7
7
B
304 308Right-handed 310
Helix 8
8
B
314 319Right-handed 310
Helix 9
9
B
347 349Right-handed 310
Helix 10
10
B
366 371Right-handed 310
Helix 11
11
B
378 382Right-handed 310
Helix 12
12
B
385 391Right-handed 310
Helix 13
13
B
392 397Right-handed alpha
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There are 2 sheets in PDB entry 1KP5. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 32first strand
Strand 2
A
35 46anti-parallel
Strand 3
A
51 58anti-parallel
Strand 4
A
227 237anti-parallel
Strand 5
A
209 218anti-parallel
Strand 6
A
158 165anti-parallel
Strand 7
A
170 180anti-parallel
Strand 8
A
186 197anti-parallel
Strand 9
A
102 110anti-parallel
Strand 10
A
115 125anti-parallel
Strand 11
A
128 138anti-parallel
Strand 12
A
22 32parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 332first strand
Strand 2
B
335 346anti-parallel
Strand 3
B
351 358anti-parallel
Strand 4
B
527 537anti-parallel
Strand 5
B
509 518anti-parallel
Strand 6
B
458 465anti-parallel
Strand 7
B
470 480anti-parallel
Strand 8
B
486 497anti-parallel
Strand 9
B
402 410anti-parallel
Strand 10
B
415 425anti-parallel
Strand 11
B
428 438anti-parallel
Strand 12
B
322 332parallel
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