Analysis of interatomic Contacts of Structural Units in PDB entry:
1KPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KPR entry

There are 6 chains in PDB entry 1KPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1TRP 274
B
 MET 1MET 99
C
 GLY 1TRP 274
D
 MET 1MET 99
P
 VAL 1LEU 9
Q
 VAL 1LEU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1KPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 55Right-handed 310
Helix 2
2
A
56 85Right-handed alpha
Helix 3
3
A
138 151Right-handed alpha
Helix 4
4
A
151 162Right-handed alpha
Helix 5
5
A
162 175Right-handed alpha
Helix 6
6
A
175 181Right-handed alpha
Helix 7
7
C
49 53Right-handed 310
Helix 8
8
C
56 85Right-handed alpha
Helix 9
9
C
138 151Right-handed alpha
Helix 10
10
C
151 162Right-handed alpha
Helix 11
11
C
162 180Right-handed alpha
Helix 12
12
C
252 256Right-handed 310
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There are 14 sheets in PDB entry 1KPR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
4 12anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 195first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
229 230anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 195first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
234 235anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
257 262anti-parallel
Strand 3
A
270 272anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 47first strand
Strand 2
C
31 37anti-parallel
Strand 3
C
18 28anti-parallel
Strand 4
C
4 14anti-parallel
Strand 5
C
94 103anti-parallel
Strand 6
C
109 118anti-parallel
Strand 7
C
121 126anti-parallel
Strand 8
C
133 135anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 193first strand
Strand 2
C
198 208anti-parallel
Strand 3
C
241 250anti-parallel
Strand 4
C
229 230anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 193first strand
Strand 2
C
198 208anti-parallel
Strand 3
C
241 250anti-parallel
Strand 4
C
234 235anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 218first strand
Strand 2
C
258 262anti-parallel
Strand 3
C
270 273anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
50 51anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
55 56anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 45first strand
Strand 2
D
36 41anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
91 94anti-parallel
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