Analysis of interatomic Contacts of Structural Units in PDB entry:
1KQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KQE entry

There are 22 chains in PDB entry 1KQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7VAL 7
A
 TRP 9TRP 9
A
 TRP 11TRP 11
A
 TRP 13TRP 13
A
 TRP 15TRP 15
B
 ALA 5ALA 5
B
 VAL 7VAL 7
B
 TRP 9TRP 9
B
 TRP 11TRP 11
B
 TRP 13TRP 13
B
 TRP 15TRP 15
D
 VAL 7VAL 7
D
 TRP 9TRP 9
D
 TRP 11TRP 11
D
 TRP 13TRP 13
D
 TRP 15TRP 15
E
 ALA 5ALA 5
E
 VAL 7VAL 7
E
 TRP 9TRP 9
E
 TRP 11TRP 11
E
 TRP 13TRP 13
E
 TRP 15TRP 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1KQE

There are 2 sheets in PDB entry 1KQE. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 14first strand
Strand 2
E
6 14anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 14first strand
Strand 2
D
6 14anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il