Analysis of interatomic Contacts of Structural Units in PDB entry:
1KR1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KR1 entry

There is 1 chain in PDB entry 1KR1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1VAL 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1KR1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 21Right-handed alpha
Helix 2
2
A
52 56Right-handed 310
Helix 3
3
A
57 58Right-handed 310
Helix 4
4
A
59 70Right-handed alpha
Helix 5
5
A
89 105Right-handed alpha
Helix 6
6
A
133 144Right-handed alpha
Helix 7
7
A
145 148Right-handed 310
Helix 8
8
A
166 172Right-handed alpha
Helix 9
9
A
185 189Right-handed 310
Helix 10
10
A
195 207Right-handed alpha
Helix 11
11
A
221 225Right-handed 310
Helix 12
12
A
231 238Right-handed alpha
Helix 13
13
A
239 244Right-handed alpha
Helix 14
14
A
256 264Right-handed alpha
Helix 15
15
A
264 270Right-handed alpha
Helix 16
16
A
271 273Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 1KR1. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
27 33parallel
Strand 3
A
73 79parallel
Strand 4
A
121 125parallel
Strand 5
A
152 155parallel
Strand 6
A
177 181parallel
Strand 7
A
213 219parallel
Strand 8
A
249 255parallel
Strand 9
A
2 7parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
40 43anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il