Analysis of interatomic Contacts of Structural Units in PDB entry:
1KU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KU0 entry

There are 2 chains in PDB entry 1KU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PRO 388
B
 ARG 1004PRO 1388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1KU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 27Right-handed 310
Helix 2
2
A
36 44Right-handed alpha
Helix 3
3
A
58 72Right-handed alpha
Helix 4
4
A
78 86Right-handed alpha
Helix 5
5
A
98 104Right-handed 310
Helix 6
6
A
114 129Right-handed alpha
Helix 7
7
A
130 141Right-handed alpha
Helix 8
8
A
145 149Right-handed 310
Helix 9
9
A
168 173Right-handed 310
Helix 10
10
A
175 195Right-handed alpha
Helix 11
11
A
198 202Right-handed 310
Helix 12
12
A
208 212Right-handed 310
Helix 13
13
A
220 230Right-handed alpha
Helix 14
14
A
231 236Right-handed alpha
Helix 15
15
A
239 245Right-handed alpha
Helix 16
16
A
245 256Right-handed alpha
Helix 17
17
A
288 295Right-handed alpha
Helix 18
18
A
295 300Right-handed alpha
Helix 19
19
A
304 308Right-handed 310
Helix 20
20
A
310 314Right-handed 310
Helix 21
21
A
321 325Right-handed 310
Helix 22
22
A
371 385Right-handed alpha
Helix 23
23
B
1023 1027Right-handed 310
Helix 24
24
B
1036 1044Right-handed alpha
Helix 25
25
B
1058 1072Right-handed alpha
Helix 26
26
B
1078 1086Right-handed alpha
Helix 27
27
B
1098 1104Right-handed 310
Helix 28
28
B
1114 1129Right-handed alpha
Helix 29
29
B
1130 1140Right-handed alpha
Helix 30
30
B
1145 1149Right-handed 310
Helix 31
31
B
1168 1173Right-handed 310
Helix 32
32
B
1175 1191Right-handed alpha
Helix 33
33
B
1208 1212Right-handed 310
Helix 34
34
B
1220 1230Right-handed alpha
Helix 35
35
B
1231 1236Right-handed alpha
Helix 36
36
B
1239 1245Right-handed alpha
Helix 37
37
B
1245 1256Right-handed alpha
Helix 38
38
B
1288 1295Right-handed alpha
Helix 39
39
B
1295 1300Right-handed alpha
Helix 40
40
B
1310 1314Right-handed 310
Helix 41
41
B
1321 1325Right-handed 310
Helix 42
42
B
1371 1384Right-handed alpha
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There are 6 sheets in PDB entry 1KU0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
10 13parallel
Strand 3
A
107 112parallel
Strand 4
A
155 161parallel
Strand 5
A
263 269parallel
Strand 6
A
348 354parallel
Strand 7
A
336 338parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
90 94anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
281 283anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1048 1050first strand
Strand 2
B
1010 1013parallel
Strand 3
B
1107 1112parallel
Strand 4
B
1155 1161parallel
Strand 5
B
1263 1269parallel
Strand 6
B
1348 1354parallel
Strand 7
B
1336 1338parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1073 1076first strand
Strand 2
B
1090 1094anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1272 1274first strand
Strand 2
B
1281 1283anti-parallel
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