Analysis of interatomic Contacts of Structural Units in PDB entry:
1KYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KYW entry

There are 3 chains in PDB entry 1KYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 13LEU 362
C
 GLY 5VAL 365
F
 GLY 5VAL 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 1KYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
30 43Right-handed alpha
Helix 3
3
A
43 50Right-handed alpha
Helix 4
4
A
58 64Right-handed alpha
Helix 5
5
A
72 87Right-handed alpha
Helix 6
6
A
109 115Right-handed alpha
Helix 7
7
A
124 132Right-handed alpha
Helix 8
8
A
133 141Right-handed alpha
Helix 9
9
A
142 150Right-handed alpha
Helix 10
10
A
152 159Right-handed alpha
Helix 11
11
A
161 169Right-handed alpha
Helix 12
12
A
169 192Right-handed alpha
Helix 13
13
A
213 222Right-handed alpha
Helix 14
14
A
232 237Right-handed alpha
Helix 15
15
A
267 271Right-handed 310
Helix 16
16
A
272 287Right-handed alpha
Helix 17
17
A
307 324Right-handed alpha
Helix 18
18
A
331 342Right-handed alpha
Helix 19
19
C
18 28Right-handed alpha
Helix 20
20
C
30 42Right-handed alpha
Helix 21
21
C
43 50Right-handed alpha
Helix 22
22
C
58 64Right-handed alpha
Helix 23
23
C
72 87Right-handed alpha
Helix 24
24
C
110 113Right-handed 310
Helix 25
25
C
124 132Right-handed alpha
Helix 26
26
C
133 141Right-handed alpha
Helix 27
27
C
142 150Right-handed alpha
Helix 28
28
C
152 159Right-handed alpha
Helix 29
29
C
161 169Right-handed alpha
Helix 30
30
C
169 195Right-handed alpha
Helix 31
31
C
232 237Right-handed alpha
Helix 32
32
C
267 271Right-handed 310
Helix 33
33
C
272 287Right-handed alpha
Helix 34
34
C
307 324Right-handed alpha
Helix 35
35
C
332 342Right-handed alpha
Helix 36
36
F
15 17Right-handed 310
Helix 37
37
F
18 28Right-handed alpha
Helix 38
38
F
30 43Right-handed alpha
Helix 39
39
F
43 50Right-handed alpha
Helix 40
40
F
58 64Right-handed alpha
Helix 41
41
F
72 87Right-handed alpha
Helix 42
42
F
110 116Right-handed 310
Helix 43
43
F
124 132Right-handed alpha
Helix 44
44
F
133 141Right-handed alpha
Helix 45
45
F
142 150Right-handed alpha
Helix 46
46
F
152 159Right-handed alpha
Helix 47
47
F
161 169Right-handed alpha
Helix 48
48
F
169 195Right-handed alpha
Helix 49
49
F
212 222Right-handed alpha
Helix 50
50
F
232 237Right-handed alpha
Helix 51
51
F
267 271Right-handed 310
Helix 52
52
F
272 286Right-handed alpha
Helix 53
53
F
307 324Right-handed alpha
Helix 54
54
F
331 342Right-handed alpha
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There are 7 sheets in PDB entry 1KYW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
102 108anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
226 231parallel
Strand 3
A
203 207parallel
Strand 4
A
262 263parallel
Strand 5
A
293 297parallel
Strand 6
A
356 361anti-parallel
Strand 7
A
347 353anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 96first strand
Strand 2
C
102 108anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
347 353first strand
Strand 2
C
356 362anti-parallel
Strand 3
C
292 300anti-parallel
Strand 4
C
261 263parallel
Strand 5
C
204 207parallel
Strand 6
C
227 231parallel
Strand 7
C
245 249parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
347 353first strand
Strand 2
C
356 362anti-parallel
Strand 3
C
292 300anti-parallel
Strand 4
C
330 331parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
90 96first strand
Strand 2
F
102 108anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
245 249first strand
Strand 2
F
226 231parallel
Strand 3
F
203 207parallel
Strand 4
F
261 263parallel
Strand 5
F
292 297parallel
Strand 6
F
356 362anti-parallel
Strand 7
F
346 353anti-parallel
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