Analysis of interatomic Contacts of Structural Units in PDB entry:
1KZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KZD entry

There are 2 chains in PDB entry 1KZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 LYS 110SER 220
2
 LYS 110SER 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1KZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
120 131Right-handed alpha
Helix 2
2
1
140 151Right-handed alpha
Helix 3
3
2
120 131Right-handed alpha
Helix 4
4
2
140 151Right-handed alpha
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There are 2 sheets in PDB entry 1KZD. Click on sheet of interest to get list of strands forming it: 1, 8,

There are 8 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
214 219first strand
Strand 2
1
134 135anti-parallel
Strand 3
1
214 219anti-parallel
Strand 4
1
155 160parallel
Strand 5
1
169 170anti-parallel
Strand 6
1
155 160anti-parallel
Strand 7
1
195 198anti-parallel
Strand 8
1
204 207anti-parallel
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There are 8 strands in 8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
214 219first strand
Strand 2
2
134 135anti-parallel
Strand 3
2
214 219anti-parallel
Strand 4
2
155 164parallel
Strand 5
2
167 170anti-parallel
Strand 6
2
155 164anti-parallel
Strand 7
2
195 198anti-parallel
Strand 8
2
204 207anti-parallel
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