Analysis of interatomic Contacts of Structural Units in PDB entry:
1L0L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1L0L entry

There are 11 chains in PDB entry 1L0L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	PHE 446
B	VAL 17	LEU 439
C	ASN 3	TRP 379
D	SER 1	PRO 240
E	SER 1	GLY 196
F	GLY 2	LYS 110
G	GLY 1	ASN 79
H	GLY 1	LYS 78
I	MET 1	GLY 57
J	ALA 2	ASN 61
K	MET 1	LYS 53

There are 93 helices in PDB entry 1L0L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	3	10	Right-handed alpha
Helix 2	2	A	44	48	Right-handed 310
Helix 3	3	A	54	63	Right-handed alpha
Helix 4	4	A	73	82	Right-handed alpha
Helix 5	5	A	105	120	Right-handed alpha
Helix 6	6	A	123	142	Right-handed alpha
Helix 7	7	A	144	158	Right-handed alpha
Helix 8	8	A	161	165	Right-handed 310
Helix 9	9	A	170	177	Right-handed alpha
Helix 10	10	A	178	190	Right-handed alpha
Helix 11	11	A	191	193	Right-handed 310
Helix 12	12	A	204	217	Right-handed alpha
Helix 13	13	A	265	278	Right-handed alpha
Helix 14	14	A	292	301	Right-handed alpha
Helix 15	15	A	330	349	Right-handed alpha
Helix 16	16	A	350	369	Right-handed alpha
Helix 17	17	A	371	386	Right-handed alpha
Helix 18	18	A	393	402	Right-handed alpha
Helix 19	19	A	403	416	Right-handed alpha
Helix 20	20	A	433	440	Right-handed alpha
Helix 21	21	B	54	58	Right-handed 310
Helix 22	22	B	64	72	Right-handed alpha
Helix 23	23	B	81	92	Right-handed alpha
Helix 24	24	B	115	129	Right-handed alpha
Helix 25	25	B	133	152	Right-handed alpha
Helix 26	26	B	154	168	Right-handed alpha
Helix 27	27	B	170	174	Right-handed 310
Helix 28	28	B	179	183	Right-handed 310
Helix 29	29	B	187	199	Right-handed alpha
Helix 30	30	B	200	202	Right-handed 310
Helix 31	31	B	212	224	Right-handed alpha
Helix 32	32	B	266	280	Right-handed alpha
Helix 33	33	B	293	303	Right-handed alpha
Helix 34	34	B	332	349	Right-handed alpha
Helix 35	35	B	353	372	Right-handed alpha
Helix 36	36	B	374	390	Right-handed alpha
Helix 37	37	B	394	404	Right-handed alpha
Helix 38	38	B	406	420	Right-handed alpha
Helix 39	39	B	429	433	Right-handed 310
Helix 40	40	C	10	19	Right-handed alpha
Helix 41	41	C	28	31	Right-handed 310
Helix 42	42	C	32	53	Right-handed alpha
Helix 43	43	C	60	72	Right-handed alpha
Helix 44	44	C	75	104	Right-handed alpha
Helix 45	45	C	105	108	Right-handed 310
Helix 46	46	C	109	133	Right-handed alpha
Helix 47	47	C	136	150	Right-handed alpha
Helix 48	48	C	151	153	Right-handed 310
Helix 49	49	C	156	166	Right-handed alpha
Helix 50	50	C	171	202	Right-handed alpha
Helix 51	51	C	220	246	Right-handed alpha
Helix 52	52	C	252	257	Right-handed 310
Helix 53	53	C	274	284	Right-handed alpha
Helix 54	54	C	286	300	Right-handed alpha
Helix 55	55	C	301	308	Right-handed 310
Helix 56	56	C	318	340	Right-handed alpha
Helix 57	57	C	344	364	Right-handed alpha
Helix 58	58	C	364	377	Right-handed alpha
Helix 59	59	D	22	36	Right-handed alpha
Helix 60	60	D	37	40	Right-handed 310
Helix 61	61	D	47	55	Right-handed alpha
Helix 62	62	D	57	66	Right-handed alpha
Helix 63	63	D	98	106	Right-handed alpha
Helix 64	64	D	122	132	Right-handed alpha
Helix 65	65	D	178	195	Right-handed alpha
Helix 66	66	D	197	232	Right-handed alpha
Helix 67	67	E	1	5	Right-handed 310
Helix 68	68	E	25	61	Right-handed alpha
Helix 69	69	E	102	107	Right-handed alpha
Helix 70	70	E	122	127	Right-handed alpha
Helix 71	71	E	129	133	Right-handed 310
Helix 72	72	F	7	25	Right-handed alpha
Helix 73	73	F	26	30	Right-handed 310
Helix 74	74	F	32	37	Right-handed 310
Helix 75	75	F	40	50	Right-handed alpha
Helix 76	76	F	51	72	Right-handed alpha
Helix 77	77	F	76	80	Right-handed 310
Helix 78	78	F	90	108	Right-handed alpha
Helix 79	79	G	20	23	Right-handed 310
Helix 80	80	G	28	70	Right-handed alpha
Helix 81	81	H	3	12	Right-handed alpha
Helix 82	82	H	15	26	Right-handed alpha
Helix 83	83	H	27	47	Right-handed alpha
Helix 84	84	H	54	73	Right-handed alpha
Helix 85	85	H	74	76	Right-handed 310
Helix 86	86	I	29	34	Right-handed alpha
Helix 87	87	J	4	14	Right-handed alpha
Helix 88	88	J	16	47	Right-handed alpha
Helix 89	89	J	51	56	Right-handed alpha
Helix 90	90	J	57	59	Right-handed 310
Helix 91	91	K	1	6	Right-handed 310
Helix 92	92	K	7	37	Right-handed alpha
Helix 93	93	K	38	43	Right-handed alpha

There are 8 sheets in PDB entry 1L0L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	24	29	anti-parallel
Strand 3	A	195	201	parallel
Strand 4	A	34	41	anti-parallel
Strand 5	A	95	102	anti-parallel
Strand 6	A	85	90	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	306	314	anti-parallel
Strand 3	A	317	326	anti-parallel
Strand 4	A	251	259	anti-parallel
Strand 5	A	421	426	anti-parallel
Strand 6	A	239	245	parallel
Strand 7	G	11	18	anti-parallel
Strand 8	D	234	237	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	204	209	parallel
Strand 4	B	44	51	anti-parallel
Strand 5	B	105	112	anti-parallel
Strand 6	B	95	100	anti-parallel
Strand 7	I	13	16	anti-parallel
Strand 8	I	22	23	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	247	first strand
Strand 2	B	422	428	parallel
Strand 3	B	252	260	anti-parallel
Strand 4	B	320	329	anti-parallel
Strand 5	B	307	315	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	217	219	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	192	193	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	90	first strand
Strand 2	E	95	98	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	163	164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1L0L

Analysis of interatomic Contacts of Structural Units in PDB entry:
1L0L