Analysis of interatomic Contacts of Structural Units in PDB entry:
1L1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1L1J entry

There are 2 chains in PDB entry 1L1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 24THR 251
B
 ASP 24THR 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1L1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 37Right-handed alpha
Helix 2
2
A
55 66Right-handed alpha
Helix 3
3
A
72 76Right-handed alpha
Helix 4
4
A
96 100Right-handed alpha
Helix 5
5
A
147 151Right-handed 310
Helix 6
6
A
239 247Right-handed alpha
Helix 7
7
A
248 250Right-handed 310
Helix 8
8
B
27 37Right-handed alpha
Helix 9
9
B
57 66Right-handed alpha
Helix 10
10
B
95 100Right-handed alpha
Helix 11
11
B
147 151Right-handed 310
Helix 12
12
B
239 247Right-handed alpha
Helix 13
13
B
248 250Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1L1J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
106 108anti-parallel
Strand 3
A
40 46anti-parallel
Strand 4
A
77 87anti-parallel
Strand 5
A
91 95anti-parallel
Strand 6
A
128 132anti-parallel
Strand 7
A
121 123anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
216 221parallel
Strand 3
A
209 211anti-parallel
Strand 4
A
156 161anti-parallel
Strand 5
A
169 183anti-parallel
Strand 6
A
190 197anti-parallel
Strand 7
A
234 238anti-parallel
Strand 8
A
216 221anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
106 108anti-parallel
Strand 3
B
40 46anti-parallel
Strand 4
B
77 85anti-parallel
Strand 5
B
91 94anti-parallel
Strand 6
B
129 132anti-parallel
Strand 7
B
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
216 222parallel
Strand 3
B
209 211anti-parallel
Strand 4
B
156 161anti-parallel
Strand 5
B
169 183anti-parallel
Strand 6
B
190 197anti-parallel
Strand 7
B
234 238anti-parallel
Strand 8
B
216 222anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il