Analysis of interatomic Contacts of Structural Units in PDB entry:
1L2A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1L2A entry

There are 6 chains in PDB entry 1L2A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 28	PRO 669
B	GLY 28	PRO 669
C	GLY 28	PRO 669
D	GLY 28	PRO 669
E	GLY 28	PRO 669
F	GLY 28	PRO 669

There are170 helices in PDB entry 1L2A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	39	53	Right-handed alpha
Helix 2	2	A	54	57	Right-handed 310
Helix 3	3	A	86	104	Right-handed alpha
Helix 4	4	A	106	120	Right-handed alpha
Helix 5	5	A	123	127	Right-handed 310
Helix 6	6	A	129	133	Right-handed 310
Helix 7	7	A	147	151	Right-handed 310
Helix 8	8	A	167	176	Right-handed alpha
Helix 9	9	A	213	217	Right-handed 310
Helix 10	10	A	234	237	Right-handed 310
Helix 11	11	A	253	274	Right-handed alpha
Helix 12	12	A	276	279	Right-handed 310
Helix 13	13	A	280	294	Right-handed alpha
Helix 14	14	A	295	299	Right-handed 310
Helix 15	15	A	350	352	Right-handed 310
Helix 16	16	A	353	363	Right-handed alpha
Helix 17	17	A	364	367	Right-handed 310
Helix 18	18	A	372	392	Right-handed alpha
Helix 19	19	A	405	409	Right-handed 310
Helix 20	20	A	440	458	Right-handed alpha
Helix 21	21	A	462	477	Right-handed alpha
Helix 22	22	A	520	542	Right-handed alpha
Helix 23	23	A	546	564	Right-handed alpha
Helix 24	24	A	579	581	Right-handed 310
Helix 25	25	A	582	587	Right-handed alpha
Helix 26	26	A	610	621	Right-handed 310
Helix 27	27	A	623	633	Right-handed alpha
Helix 28	28	A	643	661	Right-handed alpha
Helix 29	29	B	39	53	Right-handed alpha
Helix 30	30	B	86	103	Right-handed alpha
Helix 31	31	B	106	120	Right-handed alpha
Helix 32	32	B	123	127	Right-handed 310
Helix 33	33	B	129	133	Right-handed 310
Helix 34	34	B	147	151	Right-handed 310
Helix 35	35	B	167	176	Right-handed alpha
Helix 36	36	B	213	217	Right-handed 310
Helix 37	37	B	234	238	Right-handed alpha
Helix 38	38	B	253	275	Right-handed alpha
Helix 39	39	B	276	279	Right-handed 310
Helix 40	40	B	280	294	Right-handed alpha
Helix 41	41	B	295	299	Right-handed 310
Helix 42	42	B	350	352	Right-handed 310
Helix 43	43	B	353	363	Right-handed alpha
Helix 44	44	B	364	367	Right-handed 310
Helix 45	45	B	372	391	Right-handed alpha
Helix 46	46	B	405	409	Right-handed 310
Helix 47	47	B	440	458	Right-handed alpha
Helix 48	48	B	459	461	Right-handed 310
Helix 49	49	B	462	477	Right-handed alpha
Helix 50	50	B	520	542	Right-handed alpha
Helix 51	51	B	546	564	Right-handed alpha
Helix 52	52	B	579	581	Right-handed 310
Helix 53	53	B	582	587	Right-handed alpha
Helix 54	54	B	612	619	Right-handed 310
Helix 55	55	B	623	634	Right-handed alpha
Helix 56	56	B	643	661	Right-handed alpha
Helix 57	57	C	39	53	Right-handed alpha
Helix 58	58	C	54	57	Right-handed 310
Helix 59	59	C	86	104	Right-handed alpha
Helix 60	60	C	106	120	Right-handed alpha
Helix 61	61	C	123	127	Right-handed 310
Helix 62	62	C	129	133	Right-handed 310
Helix 63	63	C	147	151	Right-handed 310
Helix 64	64	C	167	176	Right-handed alpha
Helix 65	65	C	213	217	Right-handed 310
Helix 66	66	C	234	238	Right-handed alpha
Helix 67	67	C	253	274	Right-handed alpha
Helix 68	68	C	275	275	Right-handed 310
Helix 69	69	C	276	279	Right-handed 310
Helix 70	70	C	280	294	Right-handed alpha
Helix 71	71	C	295	299	Right-handed 310
Helix 72	72	C	350	352	Right-handed 310
Helix 73	73	C	353	363	Right-handed alpha
Helix 74	74	C	364	367	Right-handed 310
Helix 75	75	C	372	392	Right-handed alpha
Helix 76	76	C	405	409	Right-handed 310
Helix 77	77	C	440	458	Right-handed alpha
Helix 78	78	C	459	461	Right-handed 310
Helix 79	79	C	462	475	Right-handed alpha
Helix 80	80	C	520	542	Right-handed alpha
Helix 81	81	C	546	565	Right-handed alpha
Helix 82	82	C	579	581	Right-handed 310
Helix 83	83	C	582	587	Right-handed alpha
Helix 84	84	C	610	621	Right-handed 310
Helix 85	85	C	623	633	Right-handed alpha
Helix 86	86	C	643	661	Right-handed alpha
Helix 87	87	D	39	53	Right-handed alpha
Helix 88	88	D	54	57	Right-handed 310
Helix 89	89	D	86	104	Right-handed alpha
Helix 90	90	D	106	120	Right-handed alpha
Helix 91	91	D	123	127	Right-handed 310
Helix 92	92	D	129	133	Right-handed 310
Helix 93	93	D	147	151	Right-handed 310
Helix 94	94	D	167	176	Right-handed alpha
Helix 95	95	D	213	217	Right-handed 310
Helix 96	96	D	234	238	Right-handed alpha
Helix 97	97	D	253	274	Right-handed alpha
Helix 98	98	D	280	294	Right-handed alpha
Helix 99	99	D	295	299	Right-handed 310
Helix 100	100	D	350	352	Right-handed 310
Helix 101	101	D	353	363	Right-handed alpha
Helix 102	102	D	364	367	Right-handed 310
Helix 103	103	D	372	392	Right-handed alpha
Helix 104	104	D	405	409	Right-handed 310
Helix 105	105	D	440	458	Right-handed alpha
Helix 106	106	D	459	461	Right-handed 310
Helix 107	107	D	462	475	Right-handed alpha
Helix 108	108	D	520	542	Right-handed alpha
Helix 109	109	D	546	564	Right-handed alpha
Helix 110	110	D	579	581	Right-handed 310
Helix 111	111	D	582	587	Right-handed alpha
Helix 112	112	D	610	621	Right-handed 310
Helix 113	113	D	623	634	Right-handed alpha
Helix 114	114	D	643	661	Right-handed alpha
Helix 115	115	E	39	53	Right-handed alpha
Helix 116	116	E	54	57	Right-handed 310
Helix 117	117	E	86	104	Right-handed alpha
Helix 118	118	E	106	120	Right-handed alpha
Helix 119	119	E	123	127	Right-handed 310
Helix 120	120	E	129	133	Right-handed 310
Helix 121	121	E	147	151	Right-handed 310
Helix 122	122	E	167	176	Right-handed alpha
Helix 123	123	E	213	217	Right-handed 310
Helix 124	124	E	234	238	Right-handed alpha
Helix 125	125	E	253	274	Right-handed alpha
Helix 126	126	E	280	294	Right-handed alpha
Helix 127	127	E	295	299	Right-handed 310
Helix 128	128	E	350	352	Right-handed 310
Helix 129	129	E	353	363	Right-handed alpha
Helix 130	130	E	364	367	Right-handed 310
Helix 131	131	E	372	391	Right-handed alpha
Helix 132	132	E	405	409	Right-handed 310
Helix 133	133	E	440	458	Right-handed alpha
Helix 134	134	E	459	461	Right-handed 310
Helix 135	135	E	462	477	Right-handed alpha
Helix 136	136	E	520	542	Right-handed alpha
Helix 137	137	E	546	565	Right-handed alpha
Helix 138	138	E	579	581	Right-handed 310
Helix 139	139	E	582	587	Right-handed alpha
Helix 140	140	E	610	621	Right-handed 310
Helix 141	141	E	623	633	Right-handed alpha
Helix 142	142	E	643	661	Right-handed alpha
Helix 143	143	F	40	53	Right-handed alpha
Helix 144	144	F	54	57	Right-handed 310
Helix 145	145	F	86	104	Right-handed alpha
Helix 146	146	F	106	120	Right-handed alpha
Helix 147	147	F	123	127	Right-handed 310
Helix 148	148	F	129	133	Right-handed 310
Helix 149	149	F	147	151	Right-handed 310
Helix 150	150	F	167	176	Right-handed alpha
Helix 151	151	F	234	238	Right-handed alpha
Helix 152	152	F	253	274	Right-handed alpha
Helix 153	153	F	280	294	Right-handed alpha
Helix 154	154	F	295	299	Right-handed 310
Helix 155	155	F	316	320	Right-handed 310
Helix 156	156	F	350	352	Right-handed 310
Helix 157	157	F	353	363	Right-handed alpha
Helix 158	158	F	364	367	Right-handed 310
Helix 159	159	F	372	391	Right-handed alpha
Helix 160	160	F	405	409	Right-handed 310
Helix 161	161	F	440	458	Right-handed alpha
Helix 162	162	F	459	461	Right-handed 310
Helix 163	163	F	462	477	Right-handed alpha
Helix 164	164	F	520	542	Right-handed alpha
Helix 165	165	F	546	565	Right-handed alpha
Helix 166	166	F	579	581	Right-handed 310
Helix 167	167	F	582	587	Right-handed alpha
Helix 168	168	F	610	621	Right-handed 310
Helix 169	169	F	623	634	Right-handed alpha
Helix 170	170	F	643	661	Right-handed alpha

There are 46 sheets in PDB entry 1L2A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	185	187	anti-parallel
Strand 3	A	201	204	anti-parallel
Strand 4	A	220	221	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	239	240	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	247	251	anti-parallel
Strand 3	A	329	333	anti-parallel
Strand 4	A	339	342	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	401	403	anti-parallel
Strand 3	A	423	426	anti-parallel
Strand 4	A	419	420	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	485	494	anti-parallel
Strand 3	A	511	518	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	566	first strand
Strand 2	A	571	572	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	577	first strand
Strand 2	A	638	639	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	598	first strand
Strand 2	A	604	605	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	565	566	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	185	187	anti-parallel
Strand 3	B	201	204	anti-parallel
Strand 4	B	220	221	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	239	240	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	247	251	anti-parallel
Strand 3	B	329	333	anti-parallel
Strand 4	B	339	342	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	401	403	anti-parallel
Strand 3	B	423	426	anti-parallel
Strand 4	B	419	420	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	479	first strand
Strand 2	B	485	494	anti-parallel
Strand 3	B	511	518	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	577	first strand
Strand 2	B	638	641	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	598	first strand
Strand 2	B	604	605	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	185	187	anti-parallel
Strand 3	C	201	204	anti-parallel
Strand 4	C	220	221	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	239	240	parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	329	333	anti-parallel
Strand 4	C	339	342	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	401	403	anti-parallel
Strand 3	C	423	426	anti-parallel
Strand 4	C	419	420	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	478	479	first strand
Strand 2	C	485	494	anti-parallel
Strand 3	C	511	518	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	576	577	first strand
Strand 2	C	638	639	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	597	598	first strand
Strand 2	C	604	605	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	185	187	anti-parallel
Strand 3	D	201	204	anti-parallel
Strand 4	D	220	221	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	239	240	parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	247	251	anti-parallel
Strand 3	D	329	333	anti-parallel
Strand 4	D	339	342	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	348	first strand
Strand 2	D	401	403	anti-parallel
Strand 3	D	423	426	anti-parallel
Strand 4	D	419	420	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	478	479	first strand
Strand 2	D	485	494	anti-parallel
Strand 3	D	511	518	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	566	first strand
Strand 2	D	571	572	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	576	577	first strand
Strand 2	D	638	639	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	597	598	first strand
Strand 2	D	604	605	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	85	first strand
Strand 2	E	185	187	anti-parallel
Strand 3	E	201	204	anti-parallel
Strand 4	E	220	221	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	154	first strand
Strand 2	E	239	240	parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	224	first strand
Strand 2	E	247	251	anti-parallel
Strand 3	E	329	333	anti-parallel
Strand 4	E	339	342	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	348	first strand
Strand 2	E	401	403	anti-parallel
Strand 3	E	423	426	anti-parallel
Strand 4	E	419	420	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	478	479	first strand
Strand 2	E	485	494	anti-parallel
Strand 3	E	511	518	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	576	577	first strand
Strand 2	E	638	639	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	597	598	first strand
Strand 2	E	604	605	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	39	first strand
Strand 2	F	665	666	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	85	first strand
Strand 2	F	185	187	anti-parallel
Strand 3	F	201	204	anti-parallel
Strand 4	F	220	221	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	239	240	parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	224	first strand
Strand 2	F	247	251	anti-parallel
Strand 3	F	329	333	anti-parallel
Strand 4	F	339	342	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	348	first strand
Strand 2	F	401	403	anti-parallel
Strand 3	F	423	426	anti-parallel
Strand 4	F	419	420	anti-parallel

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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	478	479	first strand
Strand 2	F	485	494	anti-parallel
Strand 3	F	511	518	anti-parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	576	577	first strand
Strand 2	F	638	639	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	597	598	first strand
Strand 2	F	604	605	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1L2A

Analysis of interatomic Contacts of Structural Units in PDB entry:
1L2A