Analysis of interatomic Contacts of Structural Units in PDB entry:
1L3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1L3F entry

There is 1 chain in PDB entry 1L3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ILE 1LYS 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1L3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
67 89Right-handed alpha
Helix 2
2
E
132 135Right-handed 310
Helix 3
3
E
136 151Right-handed alpha
Helix 4
4
E
158 181Right-handed alpha
Helix 5
5
E
207 211Right-handed 310
Helix 6
6
E
216 220Right-handed 310
Helix 7
7
E
224 247Right-handed alpha
Helix 8
8
E
259 274Right-handed alpha
Helix 9
9
E
280 297Right-handed alpha
Helix 10
10
E
300 313Right-handed alpha
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There are 5 sheets in PDB entry 1L3F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 57first strand
Strand 2
E
28 29anti-parallel
Strand 3
E
17 24anti-parallel
Strand 4
E
4 11anti-parallel
Strand 5
E
61 62parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
113 115first strand
Strand 2
E
120 122anti-parallel
Strand 3
E
100 104parallel
Strand 4
E
39 43parallel
Strand 5
E
31 32anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
113 115first strand
Strand 2
E
120 122anti-parallel
Strand 3
E
100 104parallel
Strand 4
E
39 43parallel
Strand 5
E
53 54anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
187 188first strand
Strand 2
E
203 204anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
248 250first strand
Strand 2
E
253 255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il