Analysis of interatomic Contacts of Structural Units in PDB entry:
1L5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1L5J entry

There are 2 chains in PDB entry 1L5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 862
B
 MET 1GLN 862
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 1L5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 15Right-handed alpha
Helix 2
2
A
23 36Right-handed alpha
Helix 3
3
A
41 52Right-handed alpha
Helix 4
4
A
58 73Right-handed alpha
Helix 5
5
A
82 91Right-handed alpha
Helix 6
6
A
98 105Right-handed alpha
Helix 7
7
A
106 108Right-handed 310
Helix 8
8
A
111 121Right-handed alpha
Helix 9
9
A
127 138Right-handed alpha
Helix 10
10
A
140 152Right-handed alpha
Helix 11
11
A
153 158Right-handed alpha
Helix 12
12
A
179 183Right-handed alpha
Helix 13
13
A
184 191Right-handed 310
Helix 14
14
A
193 198Right-handed alpha
Helix 15
15
A
199 201Right-handed 310
Helix 16
16
A
219 228Right-handed alpha
Helix 17
17
A
247 258Right-handed alpha
Helix 18
18
A
279 289Right-handed alpha
Helix 19
19
A
333 342Right-handed alpha
Helix 20
20
A
343 361Right-handed alpha
Helix 21
21
A
383 392Right-handed alpha
Helix 22
22
A
417 428Right-handed alpha
Helix 23
23
A
450 466Right-handed alpha
Helix 24
24
A
478 484Right-handed alpha
Helix 25
25
A
485 487Right-handed 310
Helix 26
26
A
511 522Right-handed alpha
Helix 27
27
A
545 560Right-handed alpha
Helix 28
28
A
588 598Right-handed alpha
Helix 29
29
A
599 601Right-handed 310
Helix 30
30
A
612 633Right-handed alpha
Helix 31
31
A
637 654Right-handed alpha
Helix 32
32
A
675 677Right-handed 310
Helix 33
33
A
695 697Right-handed 310
Helix 34
34
A
713 727Right-handed alpha
Helix 35
35
A
741 751Right-handed alpha
Helix 36
36
A
752 761Right-handed alpha
Helix 37
37
A
769 773Right-handed 310
Helix 38
38
A
807 818Right-handed alpha
Helix 39
39
A
822 835Right-handed alpha
Helix 40
40
A
836 841Right-handed alpha
Helix 41
41
A
845 848Right-handed 310
Helix 42
42
A
849 858Right-handed alpha
Helix 43
43
B
1 14Right-handed alpha
Helix 44
44
B
23 36Right-handed alpha
Helix 45
45
B
41 52Right-handed alpha
Helix 46
46
B
58 73Right-handed alpha
Helix 47
47
B
82 91Right-handed alpha
Helix 48
48
B
98 105Right-handed alpha
Helix 49
49
B
106 108Right-handed 310
Helix 50
50
B
111 121Right-handed alpha
Helix 51
51
B
125 127Right-handed 310
Helix 52
52
B
128 138Right-handed alpha
Helix 53
53
B
140 152Right-handed alpha
Helix 54
54
B
153 158Right-handed alpha
Helix 55
55
B
179 183Right-handed alpha
Helix 56
56
B
184 191Right-handed 310
Helix 57
57
B
193 199Right-handed alpha
Helix 58
58
B
219 228Right-handed alpha
Helix 59
59
B
247 258Right-handed alpha
Helix 60
60
B
279 289Right-handed alpha
Helix 61
61
B
334 342Right-handed alpha
Helix 62
62
B
343 361Right-handed alpha
Helix 63
63
B
383 393Right-handed alpha
Helix 64
64
B
417 428Right-handed alpha
Helix 65
65
B
450 466Right-handed alpha
Helix 66
66
B
478 484Right-handed alpha
Helix 67
67
B
485 487Right-handed 310
Helix 68
68
B
511 522Right-handed alpha
Helix 69
69
B
545 561Right-handed alpha
Helix 70
70
B
588 598Right-handed alpha
Helix 71
71
B
599 603Right-handed 310
Helix 72
72
B
612 634Right-handed alpha
Helix 73
73
B
637 654Right-handed alpha
Helix 74
74
B
675 677Right-handed 310
Helix 75
75
B
694 698Right-handed alpha
Helix 76
76
B
713 727Right-handed alpha
Helix 77
77
B
741 751Right-handed alpha
Helix 78
78
B
752 761Right-handed alpha
Helix 79
79
B
769 773Right-handed 310
Helix 80
80
B
807 818Right-handed alpha
Helix 81
81
B
822 832Right-handed alpha
Helix 82
82
B
836 841Right-handed alpha
Helix 83
83
B
845 848Right-handed 310
Helix 84
84
B
849 858Right-handed alpha
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There are 14 sheets in PDB entry 1L5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
272 278parallel
Strand 3
A
233 242parallel
Strand 4
A
166 178parallel
Strand 5
A
306 310anti-parallel
Strand 6
A
315 318anti-parallel
Strand 7
A
324 327anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
264 269anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
526 527anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
438 440parallel
Strand 3
A
410 413parallel
Strand 4
A
492 495parallel
Strand 5
A
506 507parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 609first strand
Strand 2
A
578 582parallel
Strand 3
A
531 537parallel
Strand 4
A
668 673parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 683first strand
Strand 2
A
691 693anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 764first strand
Strand 2
A
734 737parallel
Strand 3
A
704 707parallel
Strand 4
A
784 787parallel
Strand 5
A
802 805parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 295first strand
Strand 2
B
272 278parallel
Strand 3
B
233 242parallel
Strand 4
B
166 178parallel
Strand 5
B
306 310anti-parallel
Strand 6
B
315 318anti-parallel
Strand 7
B
324 327anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 261first strand
Strand 2
B
264 269anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 404first strand
Strand 2
B
526 527anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 471first strand
Strand 2
B
438 440parallel
Strand 3
B
410 413parallel
Strand 4
B
492 495parallel
Strand 5
B
506 507parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 609first strand
Strand 2
B
578 582parallel
Strand 3
B
531 537parallel
Strand 4
B
668 673parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
681 683first strand
Strand 2
B
691 693anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
763 764first strand
Strand 2
B
734 737parallel
Strand 3
B
704 707parallel
Strand 4
B
784 787parallel
Strand 5
B
802 805parallel
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