Analysis of interatomic Contacts of Structural Units in PDB entry:
1L6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1L6F entry

There are 4 chains in PDB entry 1L6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LEU 128
A
 MET 130ARG 383
B
 ASN 2LEU 128
B
 MET 130ARG 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1L6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
38 44Right-handed alpha
Helix 3
3
A
46 58Right-handed alpha
Helix 4
4
A
66 76Right-handed alpha
Helix 5
5
A
89 91Right-handed 310
Helix 6
6
A
92 100Right-handed alpha
Helix 7
7
A
107 118Right-handed alpha
Helix 8
8
A
141 155Right-handed alpha
Helix 9
9
A
175 190Right-handed alpha
Helix 10
10
A
203 210Right-handed alpha
Helix 11
11
A
211 214Right-handed 310
Helix 12
12
A
221 226Right-handed 310
Helix 13
13
A
233 237Right-handed 310
Helix 14
14
A
264 268Right-handed 310
Helix 15
15
A
283 287Right-handed 310
Helix 16
16
A
289 294Right-handed 310
Helix 17
17
A
341 350Right-handed alpha
Helix 18
18
A
354 360Right-handed alpha
Helix 19
19
B
14 28Right-handed alpha
Helix 20
20
B
38 45Right-handed alpha
Helix 21
21
B
46 58Right-handed alpha
Helix 22
22
B
66 76Right-handed alpha
Helix 23
23
B
89 91Right-handed 310
Helix 24
24
B
92 99Right-handed alpha
Helix 25
25
B
107 118Right-handed alpha
Helix 26
26
B
141 155Right-handed alpha
Helix 27
27
B
175 190Right-handed alpha
Helix 28
28
B
203 210Right-handed alpha
Helix 29
29
B
211 214Right-handed 310
Helix 30
30
B
221 226Right-handed 310
Helix 31
31
B
233 237Right-handed 310
Helix 32
32
B
264 268Right-handed 310
Helix 33
33
B
283 287Right-handed 310
Helix 34
34
B
289 294Right-handed 310
Helix 35
35
B
341 349Right-handed alpha
Helix 36
36
B
354 360Right-handed alpha
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There are 8 sheets in PDB entry 1L6F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
366 370anti-parallel
Strand 3
A
8 13parallel
Strand 4
A
245 250anti-parallel
Strand 5
A
328 335anti-parallel
Strand 6
A
296 299anti-parallel
Strand 7
A
302 307anti-parallel
Strand 8
A
315 319anti-parallel
Strand 9
A
275 280anti-parallel
Strand 10
A
253 257anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
366 370anti-parallel
Strand 3
A
8 13parallel
Strand 4
A
245 250anti-parallel
Strand 5
A
328 335anti-parallel
Strand 6
A
338 340anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
158 164parallel
Strand 3
A
124 129parallel
Strand 4
A
101 105parallel
Strand 5
A
82 84parallel
Strand 6
A
61 64parallel
Strand 7
A
33 37parallel
Strand 8
A
217 220parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
269 270anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 378first strand
Strand 2
B
366 370anti-parallel
Strand 3
B
8 13parallel
Strand 4
B
245 250anti-parallel
Strand 5
B
328 335anti-parallel
Strand 6
B
296 299anti-parallel
Strand 7
B
302 307anti-parallel
Strand 8
B
315 318anti-parallel
Strand 9
B
275 280anti-parallel
Strand 10
B
253 257anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 378first strand
Strand 2
B
366 370anti-parallel
Strand 3
B
8 13parallel
Strand 4
B
245 250anti-parallel
Strand 5
B
328 335anti-parallel
Strand 6
B
338 340anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
158 164parallel
Strand 3
B
124 129parallel
Strand 4
B
101 105parallel
Strand 5
B
82 84parallel
Strand 6
B
61 64parallel
Strand 7
B
33 37parallel
Strand 8
B
217 220parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
269 270anti-parallel
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