Analysis of interatomic Contacts of Structural Units in PDB entry:
1L9M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1L9M entry

There are 2 chains in PDB entry 1L9M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLU 692
B	ALA 1	GLU 692

There are 28 helices in PDB entry 1L9M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	19	Right-handed alpha
Helix 2	2	A	147	155	Right-handed alpha
Helix 3	3	A	183	193	Right-handed alpha
Helix 4	4	A	195	201	Right-handed alpha
Helix 5	5	A	201	208	Right-handed alpha
Helix 6	6	A	211	223	Right-handed alpha
Helix 7	7	A	245	249	Right-handed 310
Helix 8	8	A	251	262	Right-handed alpha
Helix 9	9	A	271	287	Right-handed alpha
Helix 10	10	A	371	377	Right-handed alpha
Helix 11	11	A	384	394	Right-handed alpha
Helix 12	12	A	435	440	Right-handed alpha
Helix 13	13	A	445	460	Right-handed alpha
Helix 14	14	A	555	560	Right-handed alpha
Helix 15	15	B	11	19	Right-handed alpha
Helix 16	16	B	147	155	Right-handed alpha
Helix 17	17	B	183	193	Right-handed alpha
Helix 18	18	B	195	201	Right-handed alpha
Helix 19	19	B	201	208	Right-handed alpha
Helix 20	20	B	211	223	Right-handed alpha
Helix 21	21	B	245	249	Right-handed 310
Helix 22	22	B	252	262	Right-handed alpha
Helix 23	23	B	271	287	Right-handed alpha
Helix 24	24	B	371	376	Right-handed alpha
Helix 25	25	B	384	394	Right-handed alpha
Helix 26	26	B	435	440	Right-handed alpha
Helix 27	27	B	445	460	Right-handed alpha
Helix 28	28	B	555	561	Right-handed alpha

There are 18 sheets in PDB entry 1L9M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	37	43	anti-parallel
Strand 3	A	94	100	anti-parallel
Strand 4	A	84	91	anti-parallel
Strand 5	A	70	76	parallel
Strand 6	A	52	58	anti-parallel
Strand 7	A	108	118	anti-parallel
Strand 8	A	121	133	anti-parallel
Strand 9	A	30	32	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	166	first strand
Strand 2	A	169	176	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	267	270	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	349	352	anti-parallel
Strand 3	A	326	336	anti-parallel
Strand 4	A	290	299	anti-parallel
Strand 5	A	420	425	anti-parallel
Strand 6	A	432	434	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	312	first strand
Strand 2	A	395	402	parallel
Strand 3	A	407	414	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	488	first strand
Strand 2	A	498	506	anti-parallel
Strand 3	A	547	554	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	542	first strand
Strand 2	A	512	523	anti-parallel
Strand 3	A	568	576	anti-parallel
Strand 4	A	583	590	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	600	first strand
Strand 2	A	610	617	anti-parallel
Strand 3	A	653	660	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	645	first strand
Strand 2	A	627	632	anti-parallel
Strand 3	A	666	676	anti-parallel
Strand 4	A	679	690	anti-parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	37	43	anti-parallel
Strand 3	B	94	100	anti-parallel
Strand 4	B	84	91	anti-parallel
Strand 5	B	70	76	parallel
Strand 6	B	52	58	anti-parallel
Strand 7	B	108	118	anti-parallel
Strand 8	B	121	133	anti-parallel
Strand 9	B	30	32	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	166	first strand
Strand 2	B	169	176	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	267	270	parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	370	first strand
Strand 2	B	348	352	anti-parallel
Strand 3	B	326	337	anti-parallel
Strand 4	B	290	299	anti-parallel
Strand 5	B	420	425	anti-parallel
Strand 6	B	432	434	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	312	first strand
Strand 2	B	395	402	parallel
Strand 3	B	407	414	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	488	first strand
Strand 2	B	498	506	anti-parallel
Strand 3	B	547	554	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	542	first strand
Strand 2	B	512	523	anti-parallel
Strand 3	B	568	577	anti-parallel
Strand 4	B	580	590	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	600	first strand
Strand 2	B	610	617	anti-parallel
Strand 3	B	653	660	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	645	first strand
Strand 2	B	627	632	anti-parallel
Strand 3	B	666	676	anti-parallel
Strand 4	B	679	690	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1L9M

Analysis of interatomic Contacts of Structural Units in PDB entry:
1L9M