Analysis of interatomic Contacts of Structural Units in PDB entry:
1LAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LAR entry

There are 2 chains in PDB entry 1LAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1307PHE 1876
B
 THR 1340PHE 1876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 1LAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1308 1318Right-handed alpha
Helix 2
2
A
1324 1332Right-handed alpha
Helix 3
3
A
1342 1345Right-handed alpha
Helix 4
4
A
1347 1352Right-handed alpha
Helix 5
5
A
1405 1414Right-handed alpha
Helix 6
6
A
1498 1510Right-handed alpha
Helix 7
7
A
1528 1544Right-handed alpha
Helix 8
8
A
1550 1558Right-handed alpha
Helix 9
9
A
1568 1584Right-handed alpha
Helix 10
10
A
1591 1602Right-handed 310
Helix 11
11
A
1612 1621Right-handed alpha
Helix 12
12
A
1636 1641Right-handed 310
Helix 13
13
A
1691 1703Right-handed 310
Helix 14
14
A
1787 1802Right-handed alpha
Helix 15
15
A
1819 1836Right-handed alpha
Helix 16
16
A
1841 1850Right-handed alpha
Helix 17
17
A
1859 1874Right-handed alpha
Helix 18
18
B
1342 1345Right-handed alpha
Helix 19
19
B
1350 1352Right-handed 310
Helix 20
20
B
1405 1414Right-handed alpha
Helix 21
21
B
1498 1510Right-handed alpha
Helix 22
22
B
1528 1545Right-handed alpha
Helix 23
23
B
1550 1560Right-handed alpha
Helix 24
24
B
1568 1584Right-handed alpha
Helix 25
25
B
1594 1602Right-handed alpha
Helix 26
26
B
1612 1621Right-handed alpha
Helix 27
27
B
1631 1634Right-handed alpha
Helix 28
28
B
1636 1641Right-handed 310
Helix 29
29
B
1691 1703Right-handed 310
Helix 30
30
B
1787 1802Right-handed alpha
Helix 31
31
B
1819 1836Right-handed alpha
Helix 32
32
B
1841 1850Right-handed alpha
Helix 33
33
B
1859 1874Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1LAR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1382 1385first strand
Strand 2
A
1394 1397anti-parallel
Strand 3
A
1518 1521parallel
Strand 4
A
1419 1422parallel
Strand 5
A
1477 1485parallel
Strand 6
A
1462 1471anti-parallel
Strand 7
A
1449 1458anti-parallel
Strand 8
A
1443 1446anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1671 1674first strand
Strand 2
A
1683 1686anti-parallel
Strand 3
A
1809 1812parallel
Strand 4
A
1708 1711parallel
Strand 5
A
1765 1774parallel
Strand 6
A
1751 1760anti-parallel
Strand 7
A
1738 1747anti-parallel
Strand 8
A
1733 1735anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1382 1385first strand
Strand 2
B
1394 1397anti-parallel
Strand 3
B
1518 1521parallel
Strand 4
B
1419 1422parallel
Strand 5
B
1477 1485parallel
Strand 6
B
1462 1471anti-parallel
Strand 7
B
1449 1458anti-parallel
Strand 8
B
1443 1446anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1671 1674first strand
Strand 2
B
1683 1686anti-parallel
Strand 3
B
1809 1812parallel
Strand 4
B
1708 1711parallel
Strand 5
B
1765 1774parallel
Strand 6
B
1751 1760anti-parallel
Strand 7
B
1738 1747anti-parallel
Strand 8
B
1733 1735anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il