Analysis of interatomic Contacts of Structural Units in PDB entry:
1LBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LBW entry

There are 2 chains in PDB entry 1LBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 252
B
 MET 301LYS 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1LBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 23Right-handed alpha
Helix 2
2
A
25 30Right-handed alpha
Helix 3
3
A
43 58Right-handed alpha
Helix 4
4
A
86 91Right-handed alpha
Helix 5
5
A
108 110Right-handed 310
Helix 6
6
A
171 181Right-handed alpha
Helix 7
7
A
197 211Right-handed alpha
Helix 8
8
A
243 251Right-handed alpha
Helix 9
9
B
302 323Right-handed alpha
Helix 10
10
B
325 330Right-handed alpha
Helix 11
11
B
344 358Right-handed alpha
Helix 12
12
B
386 392Right-handed alpha
Helix 13
13
B
408 410Right-handed 310
Helix 14
14
B
471 481Right-handed alpha
Helix 15
15
B
498 511Right-handed alpha
Helix 16
16
B
542 552Right-handed alpha
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There are 6 sheets in PDB entry 1LBW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
62 66anti-parallel
Strand 3
A
77 85parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
112 119anti-parallel
Strand 6
A
125 129anti-parallel
Strand 7
A
132 135anti-parallel
Strand 8
A
138 140anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
151 155parallel
Strand 3
A
186 189parallel
Strand 4
A
236 239anti-parallel
Strand 5
A
214 216anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 335first strand
Strand 2
B
341 343anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 372first strand
Strand 2
B
362 366anti-parallel
Strand 3
B
377 385parallel
Strand 4
B
398 404anti-parallel
Strand 5
B
412 419anti-parallel
Strand 6
B
425 429anti-parallel
Strand 7
B
432 435anti-parallel
Strand 8
B
438 439anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
465 467first strand
Strand 2
B
451 455parallel
Strand 3
B
486 489parallel
Strand 4
B
536 539anti-parallel
Strand 5
B
514 516anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
496 497first strand
Strand 2
B
533 534anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il