Analysis of interatomic Contacts of Structural Units in PDB entry:
1LCG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LCG entry

There is 1 chain in PDB entry 1LCG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1LCG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 40Right-handed alpha
Helix 2
2
A
41 49Right-handed alpha
Helix 3
3
A
53 58Right-handed alpha
Helix 4
4
A
59 62Right-handed 310
Helix 5
5
A
70 74Right-handed 310
Helix 6
6
A
111 115Right-handed 310
Helix 7
7
A
121 125Right-handed 310
Helix 8
8
A
174 179Right-handed alpha
Helix 9
9
A
189 197Right-handed 310
Helix 10
10
A
199 208Right-handed alpha
Helix 11
11
A
237 241Right-handed 310
Helix 12
12
A
291 302Right-handed alpha
Helix 13
13
A
313 320Right-handed 310
Helix 14
14
A
335 339Right-handed alpha
Helix 15
15
A
371 377Right-handed alpha
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There are 5 sheets in PDB entry 1LCG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 249first strand
Strand 2
A
388 393anti-parallel
Strand 3
A
378 383anti-parallel
Strand 4
A
214 219anti-parallel
Strand 5
A
229 233anti-parallel
Strand 6
A
22 28anti-parallel
Strand 7
A
78 84anti-parallel
Strand 8
A
143 155anti-parallel
Strand 9
A
158 168anti-parallel
Strand 10
A
102 105parallel
Strand 11
A
183 186anti-parallel
Strand 12
A
89 96parallel
Strand 13
A
78 84anti-parallel
Strand 14
A
143 155anti-parallel
Strand 15
A
134 138anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
276 280anti-parallel
Strand 3
A
367 370parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
262 264anti-parallel
Strand 3
A
323 327anti-parallel
Strand 4
A
330 334anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
355 358parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
351 353anti-parallel
Strand 3
A
340 342anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il