Analysis of interatomic Contacts of Structural Units in PDB entry:
1LDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LDM entry

There is 1 chain in PDB entry 1LDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 1LDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA
A
2 8Right-handed alpha
Helix 2
AB
A
29 43Right-handed alpha
Helix 3
AC
A
54 69Right-handed alpha
Helix 4
AD
A
103 121Right-handed alpha
Helix 5
AE
A
119 128Right-handed alpha
Helix 6
A1F
A
140 152Right-handed alpha
Helix 7
A2F
A
163 179Right-handed alpha
Helix 8
A1G
A
224 236Right-handed alpha
Helix 9
A2G
A
238 243Right-handed 310
Helix 10
A3G
A
248 263Right-handed alpha
Helix 11
AH
A
307 323Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1LDM. Click on sheet of interest to get list of strands forming it: SH1, SH2, SH3,

There are 6 strands in SH1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
47 51parallel
Strand 3
A
21 26parallel
Strand 4
A
90 94parallel
Strand 5
A
132 136parallel
Strand 6
A
157 160parallel
Back to list of sheets
Back to top of page

There are 3 strands in SH2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
203 206anti-parallel
Strand 3
A
209 211anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in SH3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 273first strand
Strand 2
A
283 293anti-parallel
Strand 3
A
295 301anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il