Analysis of interatomic Contacts of Structural Units in PDB entry:
1LGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LGQ entry

There are 2 chains in PDB entry 1LGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 13SER 124
B
 MET 13SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There is 1 helix in PDB entry 1LGQ. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
111 115Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 1LGQ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
17 21anti-parallel
Strand 3
B
116 122anti-parallel
Strand 4
B
102 106anti-parallel
Strand 5
A
82 90anti-parallel
Strand 6
B
82 90anti-parallel
Strand 7
A
102 106anti-parallel
Strand 8
A
116 122anti-parallel
Strand 9
B
17 21anti-parallel
Strand 10
B
31 33anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
37 41parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
72 76anti-parallel
Strand 5
B
94 96anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
B
72 76anti-parallel
Strand 3
B
61 65anti-parallel
Strand 4
B
37 41anti-parallel
Strand 5
B
48 49parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il