Analysis of interatomic Contacts of Structural Units in PDB entry:
1LI1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1LI1 entry

There are 6 chains in PDB entry 1LI1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	THR 229
B	ASP 3	THR 229
C	GLY 5	LEU 229
D	VAL 2	THR 229
E	ASP 3	THR 229
F	ILE 4	LEU 229

There are 12 helices in PDB entry 1LI1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	99	104	Right-handed 310
Helix 2	2	A	215	219	Right-handed 310
Helix 3	1	B	99	104	Right-handed 310
Helix 4	2	B	215	219	Right-handed 310
Helix 5	1	C	99	104	Right-handed 310
Helix 6	2	C	215	219	Right-handed 310
Helix 7	1	D	99	104	Right-handed 310
Helix 8	2	D	215	219	Right-handed 310
Helix 9	1	E	99	104	Right-handed 310
Helix 10	2	E	215	219	Right-handed 310
Helix 11	1	F	99	104	Right-handed 310
Helix 12	2	F	215	219	Right-handed 310

There are 12 sheets in PDB entry 1LI1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	12	first strand
Strand 2	A	106	113	first strand
Strand 3	A	25	32	first strand
Strand 4	A	41	45	first strand
Strand 5	A	33	38	first strand
Strand 6	A	79	84	first strand
Strand 7	A	172	178	first strand
Strand 8	A	180	183	first strand
Strand 9	A	96	98	first strand

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	A	69	73	first strand
Strand 3	A	61	66	first strand
Strand 4	B	189	194	first strand
Strand 5	B	133	142	first strand
Strand 6	B	152	156	first strand
Strand 7	B	143	148	first strand
Strand 8	B	220	228	first strand
Strand 9	B	116	122	first strand

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	122	first strand
Strand 2	A	220	228	first strand
Strand 3	A	133	142	first strand
Strand 4	A	152	156	first strand
Strand 5	A	143	148	first strand
Strand 6	A	189	194	first strand
Strand 7	C	61	66	first strand
Strand 8	C	69	73	first strand
Strand 9	A	208	210	first strand

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	12	first strand
Strand 2	B	106	113	first strand
Strand 3	B	25	32	first strand
Strand 4	B	41	45	first strand
Strand 5	B	33	38	first strand
Strand 6	B	79	84	first strand
Strand 7	B	172	178	first strand
Strand 8	B	180	183	first strand
Strand 9	B	96	98	first strand

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	B	69	73	first strand
Strand 3	B	61	66	first strand
Strand 4	C	189	194	first strand
Strand 5	C	133	142	first strand
Strand 6	C	152	156	first strand
Strand 7	C	143	148	first strand
Strand 8	C	220	228	first strand
Strand 9	C	116	122	first strand

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	12	first strand
Strand 2	C	106	113	first strand
Strand 3	C	25	32	first strand
Strand 4	C	41	45	first strand
Strand 5	C	33	38	first strand
Strand 6	C	79	84	first strand
Strand 7	C	172	178	first strand
Strand 8	C	180	183	first strand
Strand 9	C	96	98	first strand

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	12	first strand
Strand 2	D	106	113	first strand
Strand 3	D	25	32	first strand
Strand 4	D	41	45	first strand
Strand 5	D	33	38	first strand
Strand 6	D	79	84	first strand
Strand 7	D	172	178	first strand
Strand 8	D	180	183	first strand
Strand 9	D	96	98	first strand

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	210	first strand
Strand 2	D	69	73	first strand
Strand 3	D	61	66	first strand
Strand 4	E	189	194	first strand
Strand 5	E	133	142	first strand
Strand 6	E	152	156	first strand
Strand 7	E	143	148	first strand
Strand 8	E	220	228	first strand
Strand 9	E	116	122	first strand

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	122	first strand
Strand 2	D	220	228	first strand
Strand 3	D	133	142	first strand
Strand 4	D	152	156	first strand
Strand 5	D	143	148	first strand
Strand 6	D	189	194	first strand
Strand 7	F	61	66	first strand
Strand 8	F	69	73	first strand
Strand 9	D	208	210	first strand

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	12	first strand
Strand 2	E	106	113	first strand
Strand 3	E	25	32	first strand
Strand 4	E	41	45	first strand
Strand 5	E	33	38	first strand
Strand 6	E	79	84	first strand
Strand 7	E	172	178	first strand
Strand 8	E	180	183	first strand
Strand 9	E	96	98	first strand

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	210	first strand
Strand 2	E	69	73	first strand
Strand 3	E	61	66	first strand
Strand 4	F	189	194	first strand
Strand 5	F	133	142	first strand
Strand 6	F	152	156	first strand
Strand 7	F	143	148	first strand
Strand 8	F	220	228	first strand
Strand 9	F	116	122	first strand

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	12	first strand
Strand 2	F	106	113	first strand
Strand 3	F	25	32	first strand
Strand 4	F	41	45	first strand
Strand 5	F	33	38	first strand
Strand 6	F	79	84	first strand
Strand 7	F	172	178	first strand
Strand 8	F	180	183	first strand
Strand 9	F	96	98	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1LI1

Analysis of interatomic Contacts of Structural Units in PDB entry:
1LI1