Analysis of interatomic Contacts of Structural Units in PDB entry:
1LI5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LI5 entry

There are 2 chains in PDB entry 1LI5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 402
B
 MET 1LEU 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1LI5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 58Right-handed alpha
Helix 2
2
A
71 81Right-handed alpha
Helix 3
3
A
84 103Right-handed alpha
Helix 4
4
A
113 116Right-handed 310
Helix 5
5
A
117 131Right-handed alpha
Helix 6
6
A
146 149Right-handed 310
Helix 7
7
A
206 218Right-handed alpha
Helix 8
8
A
227 231Right-handed 310
Helix 9
9
A
233 246Right-handed alpha
Helix 10
10
A
268 272Right-handed 310
Helix 11
11
A
276 282Right-handed alpha
Helix 12
12
A
285 295Right-handed alpha
Helix 13
13
A
305 324Right-handed alpha
Helix 14
14
A
335 348Right-handed alpha
Helix 15
15
A
351 373Right-handed alpha
Helix 16
16
A
373 389Right-handed alpha
Helix 17
17
A
397 402Right-handed alpha
Helix 18
18
B
37 57Right-handed alpha
Helix 19
19
B
86 103Right-handed alpha
Helix 20
20
B
113 116Right-handed 310
Helix 21
21
B
117 131Right-handed alpha
Helix 22
22
B
146 149Right-handed 310
Helix 23
23
B
206 217Right-handed alpha
Helix 24
24
B
227 231Right-handed 310
Helix 25
25
B
233 247Right-handed alpha
Helix 26
26
B
276 281Right-handed alpha
Helix 27
27
B
285 295Right-handed alpha
Helix 28
28
B
305 324Right-handed alpha
Helix 29
29
B
335 348Right-handed alpha
Helix 30
30
B
351 373Right-handed alpha
Helix 31
31
B
373 391Right-handed alpha
Helix 32
32
B
397 402Right-handed alpha
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There are 8 sheets in PDB entry 1LI5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
12 14anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
22 27parallel
Strand 3
A
221 225parallel
Strand 4
A
251 254parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
142 144anti-parallel
Strand 3
A
181 186anti-parallel
Strand 4
A
201 203anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
302 304parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
12 14anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
B
22 27parallel
Strand 3
B
221 225parallel
Strand 4
B
251 254parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
142 144anti-parallel
Strand 3
B
181 186anti-parallel
Strand 4
B
201 203anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
302 304parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il