Analysis of interatomic Contacts of Structural Units in PDB entry:
1LIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LIM entry

There are 6 chains in PDB entry 1LIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -1ALA 204
B
 LEU -1ALA 204
C
 LEU -1ALA 204
D
 LEU -1ALA 204
E
 LEU -1ALA 204
F
 LEU -1ALA 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1LIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 111Right-handed 310
Helix 2
2
A
166 173Right-handed alpha
Helix 3
3
B
109 111Right-handed 310
Helix 4
4
B
166 173Right-handed alpha
Helix 5
5
C
109 111Right-handed 310
Helix 6
6
C
166 173Right-handed alpha
Helix 7
7
D
109 111Right-handed 310
Helix 8
8
D
166 173Right-handed alpha
Helix 9
9
E
109 111Right-handed 310
Helix 10
10
E
166 173Right-handed alpha
Helix 11
11
F
109 111Right-handed 310
Helix 12
12
F
166 173Right-handed alpha
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There are 24 sheets in PDB entry 1LIM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
196 200anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
19 22anti-parallel
Strand 3
A
130 133anti-parallel
Strand 4
A
47 53anti-parallel
Strand 5
A
61 67anti-parallel
Strand 6
A
70 74anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
105 109anti-parallel
Strand 5
A
112 114anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
153 155anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
196 200anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
19 22anti-parallel
Strand 3
B
130 133anti-parallel
Strand 4
B
47 53anti-parallel
Strand 5
B
61 67anti-parallel
Strand 6
B
70 74anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
105 109anti-parallel
Strand 5
B
112 114anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
153 155anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 11first strand
Strand 2
C
196 200anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
19 22anti-parallel
Strand 3
C
130 133anti-parallel
Strand 4
C
47 53anti-parallel
Strand 5
C
61 67anti-parallel
Strand 6
C
70 74anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 160first strand
Strand 2
C
33 39anti-parallel
Strand 3
C
92 98anti-parallel
Strand 4
C
105 109anti-parallel
Strand 5
C
112 114anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
153 155anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 11first strand
Strand 2
D
196 200anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
190 193first strand
Strand 2
D
19 22anti-parallel
Strand 3
D
130 133anti-parallel
Strand 4
D
47 53anti-parallel
Strand 5
D
61 67anti-parallel
Strand 6
D
70 74anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 160first strand
Strand 2
D
33 39anti-parallel
Strand 3
D
92 98anti-parallel
Strand 4
D
105 109anti-parallel
Strand 5
D
112 114anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 40first strand
Strand 2
D
153 155anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
7 11first strand
Strand 2
E
196 200anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
190 193first strand
Strand 2
E
19 22anti-parallel
Strand 3
E
130 133anti-parallel
Strand 4
E
47 53anti-parallel
Strand 5
E
61 67anti-parallel
Strand 6
E
70 74anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
158 160first strand
Strand 2
E
33 39anti-parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
105 109anti-parallel
Strand 5
E
112 114anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 40first strand
Strand 2
E
153 155anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
7 11first strand
Strand 2
F
196 200anti-parallel
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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
190 193first strand
Strand 2
F
19 22anti-parallel
Strand 3
F
130 133anti-parallel
Strand 4
F
47 53anti-parallel
Strand 5
F
61 67anti-parallel
Strand 6
F
70 74anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
158 160first strand
Strand 2
F
33 39anti-parallel
Strand 3
F
92 98anti-parallel
Strand 4
F
105 109anti-parallel
Strand 5
F
112 114anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 40first strand
Strand 2
F
153 155anti-parallel
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