Analysis of interatomic Contacts of Structural Units in PDB entry:
1LJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LJ8 entry

There is 1 chain in PDB entry 1LJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PRO 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1LJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
21 25Right-handed 310
Helix 3
3
A
35 41Right-handed alpha
Helix 4
4
A
41 51Right-handed alpha
Helix 5
5
A
68 78Right-handed alpha
Helix 6
6
A
111 120Right-handed alpha
Helix 7
7
A
149 158Right-handed alpha
Helix 8
8
A
164 179Right-handed alpha
Helix 9
9
A
194 211Right-handed alpha
Helix 10
10
A
211 222Right-handed alpha
Helix 11
11
A
237 249Right-handed alpha
Helix 12
12
A
276 281Right-handed 310
Helix 13
13
A
288 314Right-handed alpha
Helix 14
14
A
317 323Right-handed alpha
Helix 15
15
A
324 338Right-handed alpha
Helix 16
16
A
339 343Right-handed 310
Helix 17
17
A
350 363Right-handed alpha
Helix 18
18
A
370 376Right-handed alpha
Helix 19
19
A
377 386Right-handed alpha
Helix 20
20
A
386 397Right-handed alpha
Helix 21
21
A
400 414Right-handed alpha
Helix 22
22
A
430 438Right-handed alpha
Helix 23
23
A
439 442Right-handed 310
Helix 24
24
A
443 449Right-handed alpha
Helix 25
25
A
451 456Right-handed alpha
Helix 26
26
A
458 461Right-handed 310
Helix 27
27
A
462 489Right-handed alpha
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There are 4 sheets in PDB entry 1LJ8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
59 64parallel
Strand 3
A
27 32parallel
Strand 4
A
126 129parallel
Strand 5
A
185 188parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
256 258parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
144 145anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
263 266anti-parallel
Strand 3
A
283 284parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il