Analysis of interatomic Contacts of Structural Units in PDB entry:
1LLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LLC entry

There is 1 chain in PDB entry 1LLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13ILE 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1LLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AB
A
30 43Right-handed alpha
Helix 2
AC
A
56 69Right-handed alpha
Helix 3
AD
A
114 123Right-handed alpha
Helix 4
AE
A
123 131Right-handed alpha
Helix 5
A1F
A
142 154Right-handed alpha
Helix 6
A2F
A
164 180Right-handed alpha
Helix 7
A1G
A
226 235Right-handed alpha
Helix 8
A2G
A
236 242Right-handed 310
Helix 9
A3G
A
247 263Right-handed alpha
Helix 10
AH
A
309 330Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1LLC. Click on sheet of interest to get list of strands forming it: SH1, S2A, S2B, SH3,

There are 6 strands in SH1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
47 53parallel
Strand 3
A
22 28parallel
Strand 4
A
92 99parallel
Strand 5
A
134 139parallel
Strand 6
A
159 162parallel
Back to list of sheets
Back to top of page

There are 3 strands in S2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
202 202anti-parallel
Strand 3
A
210 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in S2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
206 207anti-parallel
Strand 3
A
210 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in SH3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 275first strand
Strand 2
A
285 293anti-parallel
Strand 3
A
297 303anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il