Analysis of interatomic Contacts of Structural Units in PDB entry:
1LM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LM1 entry

There is 1 chain in PDB entry 1LM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1ASN 1507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 1LM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
29 32Right-handed 310
Helix 3
3
A
54 63Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
82 100Right-handed alpha
Helix 6
6
A
113 117Right-handed 310
Helix 7
7
A
118 123Right-handed alpha
Helix 8
8
A
140 158Right-handed alpha
Helix 9
9
A
180 182Right-handed 310
Helix 10
10
A
183 188Right-handed alpha
Helix 11
11
A
189 193Right-handed 310
Helix 12
12
A
214 218Right-handed 310
Helix 13
13
A
232 244Right-handed alpha
Helix 14
14
A
245 247Right-handed 310
Helix 15
15
A
253 258Right-handed alpha
Helix 16
16
A
259 261Right-handed 310
Helix 17
17
A
269 284Right-handed alpha
Helix 18
18
A
287 296Right-handed alpha
Helix 19
19
A
303 307Right-handed 310
Helix 20
20
A
309 323Right-handed alpha
Helix 21
21
A
374 376Right-handed 310
Helix 22
22
A
401 411Right-handed alpha
Helix 23
23
A
414 422Right-handed alpha
Helix 24
24
A
442 450Right-handed alpha
Helix 25
25
A
453 459Right-handed alpha
Helix 26
26
A
460 468Right-handed alpha
Helix 27
27
A
490 493Right-handed 310
Helix 28
28
A
512 516Right-handed 310
Helix 29
29
A
547 557Right-handed alpha
Helix 30
30
A
575 593Right-handed alpha
Helix 31
31
A
603 607Right-handed 310
Helix 32
32
A
617 632Right-handed alpha
Helix 33
33
A
633 633Right-handed 310
Helix 34
34
A
634 638Right-handed 310
Helix 35
35
A
649 659Right-handed alpha
Helix 36
36
A
666 678Right-handed alpha
Helix 37
37
A
679 688Right-handed alpha
Helix 38
38
A
695 717Right-handed alpha
Helix 39
39
A
722 729Right-handed alpha
Helix 40
40
A
738 746Right-handed alpha
Helix 41
41
A
757 770Right-handed alpha
Helix 42
42
A
771 773Right-handed 310
Helix 43
43
A
798 812Right-handed alpha
Helix 44
44
A
824 837Right-handed alpha
Helix 45
45
A
841 844Right-handed 310
Helix 46
46
A
862 868Right-handed alpha
Helix 47
47
A
881 895Right-handed alpha
Helix 48
48
A
907 912Right-handed 310
Helix 49
49
A
953 959Right-handed alpha
Helix 50
50
A
980 984Right-handed 310
Helix 51
51
A
985 993Right-handed alpha
Helix 52
52
A
1011 1026Right-handed alpha
Helix 53
53
A
1040 1051Right-handed alpha
Helix 54
54
A
1070 1076Right-handed alpha
Helix 55
55
A
1079 1094Right-handed alpha
Helix 56
56
A
1096 1100Right-handed 310
Helix 57
57
A
1110 1121Right-handed alpha
Helix 58
58
A
1128 1135Right-handed alpha
Helix 59
59
A
1142 1146Right-handed 310
Helix 60
60
A
1156 1161Right-handed alpha
Helix 61
61
A
1166 1189Right-handed alpha
Helix 62
62
A
1192 1196Right-handed 310
Helix 63
63
A
1199 1201Right-handed 310
Helix 64
64
A
1219 1224Right-handed alpha
Helix 65
65
A
1232 1236Right-handed 310
Helix 66
66
A
1246 1252Right-handed alpha
Helix 67
67
A
1255 1262Right-handed alpha
Helix 68
68
A
1281 1293Right-handed alpha
Helix 69
69
A
1353 1357Right-handed 310
Helix 70
70
A
1437 1442Right-handed alpha
Helix 71
71
A
1454 1472Right-handed alpha
Helix 72
72
A
1474 1483Right-handed alpha
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There are 10 sheets in PDB entry 1LM1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
200 205anti-parallel
Strand 4
A
2 7anti-parallel
Strand 5
A
362 365anti-parallel
Strand 6
A
353 357anti-parallel
Strand 7
A
378 383anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 109first strand
Strand 2
A
127 134anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
164 169anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
330 335anti-parallel
Strand 3
A
339 344anti-parallel
Strand 4
A
389 393anti-parallel
Strand 5
A
397 399anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
1068 1069anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 497first strand
Strand 2
A
732 734anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
597 601parallel
Strand 3
A
639 643parallel
Strand 4
A
663 665parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 848first strand
Strand 2
A
1203 1205anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 871first strand
Strand 2
A
1124 1126parallel
Strand 3
A
1101 1105parallel
Strand 4
A
1055 1059parallel
Strand 5
A
1030 1036parallel
Strand 6
A
962 966parallel
Strand 7
A
942 945parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 979first strand
Strand 2
A
1000 1001anti-parallel
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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1266 1273first strand
Strand 2
A
1300 1309parallel
Strand 3
A
1321 1329parallel
Strand 4
A
1338 1345parallel
Strand 5
A
1370 1378parallel
Strand 6
A
1391 1396parallel
Strand 7
A
1406 1412parallel
Strand 8
A
1426 1430parallel
Strand 9
A
1493 1495anti-parallel
Strand 10
A
1448 1450anti-parallel
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