Analysis of interatomic Contacts of Structural Units in PDB entry:
1LM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LM7 entry

There are 2 chains in PDB entry 1LM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2209GLU 2448
B
 SER 2209GLU 2448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1LM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2218 2225Right-handed alpha
Helix 2
2
A
2229 2238Right-handed alpha
Helix 3
3
A
2245 2250Right-handed alpha
Helix 4
4
A
2250 2255Right-handed alpha
Helix 5
5
A
2274 2279Right-handed alpha
Helix 6
6
A
2284 2297Right-handed alpha
Helix 7
7
A
2311 2318Right-handed alpha
Helix 8
8
A
2333 2338Right-handed alpha
Helix 9
9
A
2349 2355Right-handed alpha
Helix 10
10
A
2360 2373Right-handed alpha
Helix 11
11
A
2387 2394Right-handed alpha
Helix 12
12
A
2398 2407Right-handed alpha
Helix 13
13
A
2425 2432Right-handed alpha
Helix 14
14
B
2218 2225Right-handed alpha
Helix 15
15
B
2229 2235Right-handed alpha
Helix 16
16
B
2245 2250Right-handed alpha
Helix 17
17
B
2250 2255Right-handed alpha
Helix 18
18
B
2273 2279Right-handed alpha
Helix 19
19
B
2284 2297Right-handed alpha
Helix 20
20
B
2311 2318Right-handed alpha
Helix 21
21
B
2325 2330Right-handed alpha
Helix 22
22
B
2333 2338Right-handed alpha
Helix 23
23
B
2349 2355Right-handed alpha
Helix 24
24
B
2360 2373Right-handed alpha
Helix 25
25
B
2387 2394Right-handed alpha
Helix 26
26
B
2398 2407Right-handed alpha
Helix 27
27
B
2425 2432Right-handed alpha
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There are 12 sheets in PDB entry 1LM7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2210 2211first strand
Strand 2
A
2216 2217anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2270 2273first strand
Strand 2
A
2260 2265anti-parallel
Strand 3
A
2442 2446parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2301 2303first strand
Strand 2
A
2308 2310anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2339 2340first strand
Strand 2
A
2347 2348anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2377 2378first strand
Strand 2
A
2385 2386anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2415 2417first strand
Strand 2
A
2422 2424anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2210 2211first strand
Strand 2
B
2216 2217anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2270 2272first strand
Strand 2
B
2260 2265anti-parallel
Strand 3
B
2442 2446parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2301 2303first strand
Strand 2
B
2308 2310anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2339 2340first strand
Strand 2
B
2347 2348anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2377 2379first strand
Strand 2
B
2384 2386anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2415 2417first strand
Strand 2
B
2422 2424anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il