Analysis of interatomic Contacts of Structural Units in PDB entry:
1LME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LME entry

There are 4 chains in PDB entry 1LME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -8GLY 86
A
 LEU 88PRO 145
B
 HIS -1GLY 86
B
 LEU 88PRO 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1LME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
23 40Right-handed alpha
Helix 3
3
A
48 51Right-handed 310
Helix 4
4
A
121 135Right-handed alpha
Helix 5
5
A
138 143Right-handed 310
Helix 6
6
B
9 14Right-handed 310
Helix 7
7
B
23 40Right-handed alpha
Helix 8
8
B
48 51Right-handed 310
Helix 9
9
B
121 134Right-handed alpha
Helix 10
10
B
138 142Right-handed 310
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There are 4 sheets in PDB entry 1LME. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
56 59anti-parallel
Strand 3
A
66 76anti-parallel
Strand 4
A
102 108anti-parallel
Strand 5
A
114 120anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
95 100anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
56 59anti-parallel
Strand 3
B
66 76anti-parallel
Strand 4
B
102 108anti-parallel
Strand 5
B
114 120anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 85first strand
Strand 2
B
95 100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il