Analysis of interatomic Contacts of Structural Units in PDB entry:
1LNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LNJ entry

There is 1 chain in PDB entry 1LNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1HIS 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1LNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 32Right-handed alpha
Helix 2
2
A
42 44Right-handed 310
Helix 3
3
A
45 56Right-handed alpha
Helix 4
4
A
64 78Right-handed alpha
Helix 5
5
A
93 106Right-handed alpha
Helix 6
6
A
138 144Right-handed 310
Helix 7
7
A
152 162Right-handed alpha
Helix 8
8
A
170 174Right-handed 310
Helix 9
9
A
175 189Right-handed alpha
Helix 10
10
A
199 205Right-handed alpha
Helix 11
11
A
206 214Right-handed alpha
Helix 12
12
A
215 217Right-handed 310
Helix 13
13
A
224 235Right-handed alpha
Helix 14
14
A
240 251Right-handed alpha
Helix 15
15
A
294 312Right-handed alpha
Helix 16
16
A
315 332Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1LNJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 115first strand
Strand 2
A
84 91parallel
Strand 3
A
9 12parallel
Strand 4
A
164 168parallel
Strand 5
A
192 196parallel
Strand 6
A
219 223parallel
Strand 7
A
261 266parallel
Strand 8
A
269 274anti-parallel
Strand 9
A
279 282anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
131 137parallel
Strand 3
A
122 128anti-parallel
Strand 4
A
16 22parallel
Strand 5
A
59 63anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il