Analysis of interatomic Contacts of Structural Units in PDB entry:
1LNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LNL entry

There are 3 chains in PDB entry 1LNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3LYS 405
B
 GLY -3LYS 405
C
 GLY -3LYS 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 1LNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
11 26Right-handed alpha
Helix 3
3
A
35 39Right-handed 310
Helix 4
4
A
65 84Right-handed alpha
Helix 5
5
A
103 108Right-handed alpha
Helix 6
6
A
122 126Right-handed 310
Helix 7
7
A
155 166Right-handed alpha
Helix 8
8
A
170 190Right-handed alpha
Helix 9
9
A
200 204Right-handed 310
Helix 10
10
A
205 205Right-handed 310
Helix 11
11
A
206 212Right-handed alpha
Helix 12
12
A
213 229Right-handed alpha
Helix 13
13
A
249 253Right-handed 310
Helix 14
14
A
259 264Right-handed alpha
Helix 15
15
A
267 272Right-handed 310
Helix 16
16
A
273 278Right-handed alpha
Helix 17
17
A
291 303Right-handed alpha
Helix 18
18
A
361 367Right-handed alpha
Helix 19
19
A
391 395Right-handed 310
Helix 20
20
B
11 26Right-handed alpha
Helix 21
21
B
33 38Right-handed alpha
Helix 22
22
B
65 84Right-handed alpha
Helix 23
23
B
103 108Right-handed alpha
Helix 24
24
B
123 126Right-handed 310
Helix 25
25
B
142 146Right-handed 310
Helix 26
26
B
155 167Right-handed alpha
Helix 27
27
B
169 181Right-handed alpha
Helix 28
28
B
182 190Right-handed alpha
Helix 29
29
B
200 205Right-handed 310
Helix 30
30
B
206 230Right-handed alpha
Helix 31
31
B
259 265Right-handed alpha
Helix 32
32
B
267 272Right-handed 310
Helix 33
33
B
273 278Right-handed alpha
Helix 34
34
B
286 290Right-handed 310
Helix 35
35
B
291 301Right-handed alpha
Helix 36
36
B
361 367Right-handed alpha
Helix 37
37
C
11 27Right-handed alpha
Helix 38
38
C
33 42Right-handed alpha
Helix 39
39
C
65 79Right-handed alpha
Helix 40
40
C
81 85Right-handed 310
Helix 41
41
C
103 108Right-handed alpha
Helix 42
42
C
122 126Right-handed 310
Helix 43
43
C
155 167Right-handed alpha
Helix 44
44
C
169 190Right-handed alpha
Helix 45
45
C
198 205Right-handed 310
Helix 46
46
C
206 230Right-handed alpha
Helix 47
47
C
260 265Right-handed alpha
Helix 48
48
C
267 271Right-handed 310
Helix 49
49
C
273 278Right-handed alpha
Helix 50
50
C
291 303Right-handed alpha
Helix 51
51
C
361 368Right-handed alpha
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There are 13 sheets in PDB entry 1LNL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
280 282parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 360first strand
Strand 2
A
307 312anti-parallel
Strand 3
A
402 403anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 342first strand
Strand 2
A
321 328anti-parallel
Strand 3
A
377 384anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
3 6parallel
Strand 3
B
281 282parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
119 121anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
134 135anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 360first strand
Strand 2
B
307 312anti-parallel
Strand 3
B
399 403anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 340first strand
Strand 2
B
321 325anti-parallel
Strand 3
B
380 384anti-parallel
Strand 4
B
389 390anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 92first strand
Strand 2
C
2 6parallel
Strand 3
C
280 282parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
119 120anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 129first strand
Strand 2
C
134 135anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
307 311first strand
Strand 2
C
399 403anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
336 342first strand
Strand 2
C
321 329anti-parallel
Strand 3
C
376 384anti-parallel
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