Analysis of interatomic Contacts of Structural Units in PDB entry:
1LNO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LNO entry

There is 1 chain in PDB entry 1LNO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1PHE 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1LNO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
27 37Right-handed alpha
Helix 3
3
A
45 50Right-handed 310
Helix 4
4
A
58 69Right-handed alpha
Helix 5
5
A
74 85Right-handed alpha
Helix 6
6
A
87 90Right-handed 310
Helix 7
7
A
91 98Right-handed alpha
Helix 8
8
A
118 126Right-handed alpha
Helix 9
9
A
127 132Right-handed alpha
Helix 10
10
A
151 166Right-handed alpha
Helix 11
11
A
175 179Right-handed alpha
Helix 12
12
A
184 197Right-handed alpha
Helix 13
13
A
204 215Right-handed alpha
Helix 14
14
A
218 222Right-handed 310
Helix 15
15
A
249 258Right-handed alpha
Helix 16
16
A
298 306Right-handed alpha
Helix 17
17
A
316 324Right-handed alpha
Helix 18
18
A
349 353Right-handed 310
Helix 19
19
A
357 372Right-handed alpha
Helix 20
20
A
381 388Right-handed alpha
Helix 21
21
A
391 416Right-handed alpha
Helix 22
22
A
466 477Right-handed alpha
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There are 3 sheets in PDB entry 1LNO. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
39 43parallel
Strand 3
A
447 452anti-parallel
Strand 4
A
12 13anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
39 43parallel
Strand 3
A
447 452anti-parallel
Strand 4
A
420 423anti-parallel
Strand 5
A
4 8parallel
Strand 6
A
375 380parallel
Strand 7
A
310 315parallel
Strand 8
A
337 342parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
168 174anti-parallel
Strand 3
A
136 142parallel
Strand 4
A
104 110parallel
Strand 5
A
238 241parallel
Strand 6
A
273 276parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il