Analysis of interatomic Contacts of Structural Units in PDB entry:
1LNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LNY entry

There are 2 chains in PDB entry 1LNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28PHE 457
B
 ALA 27PHE 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1LNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 54Right-handed alpha
Helix 2
2
A
55 57Right-handed 310
Helix 3
3
A
86 91Right-handed 310
Helix 4
4
A
105 118Right-handed alpha
Helix 5
5
A
123 126Right-handed 310
Helix 6
6
A
138 156Right-handed alpha
Helix 7
7
A
166 176Right-handed alpha
Helix 8
8
A
181 186Right-handed alpha
Helix 9
9
A
188 207Right-handed alpha
Helix 10
10
A
213 229Right-handed alpha
Helix 11
11
A
234 245Right-handed alpha
Helix 12
12
A
257 261Right-handed 310
Helix 13
13
A
277 285Right-handed alpha
Helix 14
14
A
287 289Right-handed 310
Helix 15
15
A
316 326Right-handed alpha
Helix 16
16
A
344 355Right-handed alpha
Helix 17
17
A
363 370Right-handed 310
Helix 18
18
A
392 397Right-handed alpha
Helix 19
19
A
418 422Right-handed 310
Helix 20
20
A
423 438Right-handed alpha
Helix 21
21
B
45 55Right-handed alpha
Helix 22
22
B
86 91Right-handed 310
Helix 23
23
B
105 118Right-handed alpha
Helix 24
24
B
123 126Right-handed 310
Helix 25
25
B
138 157Right-handed alpha
Helix 26
26
B
166 176Right-handed alpha
Helix 27
27
B
181 187Right-handed alpha
Helix 28
28
B
188 207Right-handed alpha
Helix 29
29
B
213 229Right-handed alpha
Helix 30
30
B
234 245Right-handed alpha
Helix 31
31
B
257 261Right-handed 310
Helix 32
32
B
277 285Right-handed alpha
Helix 33
33
B
287 289Right-handed 310
Helix 34
34
B
316 326Right-handed alpha
Helix 35
35
B
344 355Right-handed alpha
Helix 36
36
B
363 370Right-handed 310
Helix 37
37
B
392 399Right-handed alpha
Helix 38
38
B
418 422Right-handed 310
Helix 39
39
B
423 438Right-handed alpha
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There are 12 sheets in PDB entry 1LNY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
128 131parallel
Strand 3
A
95 98parallel
Strand 4
A
59 62parallel
Strand 5
A
250 253parallel
Strand 6
A
33 38parallel
Strand 7
A
291 299parallel
Strand 8
A
358 362parallel
Strand 9
A
441 445parallel
Strand 10
A
453 455anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 75first strand
Strand 2
A
78 82anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
135 136parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
338 340anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 407first strand
Strand 2
A
372 381anti-parallel
Strand 3
A
342 343parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 407first strand
Strand 2
A
372 381anti-parallel
Strand 3
A
384 385anti-parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
128 131parallel
Strand 3
B
95 98parallel
Strand 4
B
59 62parallel
Strand 5
B
250 253parallel
Strand 6
B
33 38parallel
Strand 7
B
291 299parallel
Strand 8
B
358 362parallel
Strand 9
B
441 445parallel
Strand 10
B
453 455anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 75first strand
Strand 2
B
78 82anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
135 136parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 304first strand
Strand 2
B
338 340anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 407first strand
Strand 2
B
372 381anti-parallel
Strand 3
B
342 343parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 407first strand
Strand 2
B
372 381anti-parallel
Strand 3
B
384 385anti-parallel
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