Analysis of interatomic Contacts of Structural Units in PDB entry:
1LNZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LNZ entry

There are 2 chains in PDB entry 1LNZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 342
B
 MSE 1TYR 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1LNZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
125 129Right-handed 310
Helix 3
3
A
170 178Right-handed alpha
Helix 4
4
A
213 220Right-handed alpha
Helix 5
5
A
226 237Right-handed alpha
Helix 6
6
A
253 268Right-handed alpha
Helix 7
7
A
288 300Right-handed alpha
Helix 8
8
A
317 329Right-handed alpha
Helix 9
9
B
55 60Right-handed 310
Helix 10
10
B
125 130Right-handed 310
Helix 11
11
B
170 178Right-handed alpha
Helix 12
12
B
213 218Right-handed alpha
Helix 13
13
B
228 237Right-handed alpha
Helix 14
14
B
253 267Right-handed alpha
Helix 15
15
B
288 300Right-handed alpha
Helix 16
16
B
316 330Right-handed alpha
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There are 8 sheets in PDB entry 1LNZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
148 156anti-parallel
Strand 4
A
2 11anti-parallel
Strand 5
A
63 65parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
148 156anti-parallel
Strand 4
A
2 11anti-parallel
Strand 5
A
184 185anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
44 48parallel
Strand 3
A
113 117anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
197 201anti-parallel
Strand 3
A
207 212anti-parallel
Strand 4
A
161 164parallel
Strand 5
A
239 245parallel
Strand 6
A
280 282parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
3 11parallel
Strand 3
B
148 156anti-parallel
Strand 4
B
93 97anti-parallel
Strand 5
B
103 107anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
28 33anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
44 48parallel
Strand 3
B
113 117anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 201first strand
Strand 2
B
207 212anti-parallel
Strand 3
B
161 164parallel
Strand 4
B
239 245parallel
Strand 5
B
277 282parallel
Strand 6
B
306 308parallel
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