Analysis of interatomic Contacts of Structural Units in PDB entry:
1LP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LP2 entry

There is 1 chain in PDB entry 1LP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1LP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 75Right-handed alpha
Helix 2
2
A
106 120Right-handed alpha
Helix 3
3
A
128 138Right-handed alpha
Helix 4
4
A
151 157Right-handed 310
Helix 5
5
A
158 163Right-handed alpha
Helix 6
6
A
167 175Right-handed alpha
Helix 7
7
A
182 198Right-handed alpha
Helix 8
8
A
200 203Right-handed 310
Helix 9
9
A
249 260Right-handed alpha
Helix 10
10
A
262 273Right-handed alpha
Helix 11
11
A
274 281Right-handed alpha
Helix 12
12
A
285 295Right-handed alpha
Helix 13
13
A
297 322Right-handed alpha
Helix 14
14
A
333 339Right-handed alpha
Helix 15
15
A
339 348Right-handed alpha
Helix 16
16
A
350 354Right-handed 310
Helix 17
17
A
358 364Right-handed alpha
Helix 18
18
A
386 401Right-handed alpha
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There are 2 sheets in PDB entry 1LP2. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
27 35anti-parallel
Strand 4
A
16 22anti-parallel
Strand 5
A
6 11anti-parallel
Strand 6
A
87 92parallel
Strand 7
A
146 149parallel
Strand 8
A
103 104anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
205 211anti-parallel
Strand 4
A
328 332parallel
Strand 5
A
379 382parallel
Strand 6
A
369 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il