Analysis of interatomic Contacts of Structural Units in PDB entry:
1LP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LP5 entry

There is 1 chain in PDB entry 1LP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1LP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
39 41Right-handed 310
Helix 3
3
A
78 80Right-handed 310
Helix 4
4
A
92 108Right-handed alpha
Helix 5
5
A
115 122Right-handed alpha
Helix 6
6
A
125 135Right-handed 310
Helix 7
7
A
143 155Right-handed alpha
Helix 8
8
A
179 189Right-handed alpha
Helix 9
9
A
201 206Right-handed 310
Helix 10
10
A
248 266Right-handed alpha
Helix 11
11
A
289 297Right-handed alpha
Helix 12
12
A
300 315Right-handed alpha
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There are 5 sheets in PDB entry 1LP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 76first strand
Strand 2
A
49 59anti-parallel
Strand 3
A
34 38anti-parallel
Strand 4
A
3 7parallel
Strand 5
A
82 85parallel
Strand 6
A
111 113parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 76first strand
Strand 2
A
49 59anti-parallel
Strand 3
A
43 46anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
195 199anti-parallel
Strand 3
A
157 161anti-parallel
Strand 4
A
171 173anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 283first strand
Strand 2
A
269 275anti-parallel
Strand 3
A
208 214anti-parallel
Strand 4
A
217 218anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 283first strand
Strand 2
A
269 275anti-parallel
Strand 3
A
208 214anti-parallel
Strand 4
A
221 225anti-parallel
Strand 5
A
243 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il