Analysis of interatomic Contacts of Structural Units in PDB entry:
1LQ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LQ0 entry

There is 1 chain in PDB entry 1LQ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22SER 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1LQ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
72 83Right-handed alpha
Helix 5
5
A
84 86Right-handed 310
Helix 6
6
A
103 110Right-handed alpha
Helix 7
7
A
112 131Right-handed alpha
Helix 8
8
A
150 174Right-handed alpha
Helix 9
9
A
187 195Right-handed alpha
Helix 10
10
A
196 204Right-handed alpha
Helix 11
11
A
235 241Right-handed 310
Helix 12
12
A
242 253Right-handed alpha
Helix 13
13
A
256 258Right-handed 310
Helix 14
14
A
303 307Right-handed alpha
Helix 15
15
A
336 351Right-handed alpha
Helix 16
16
A
359 363Right-handed 310
Helix 17
17
A
375 386Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1LQ0.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
23 29parallel
Strand 4
A
354 358parallel
Strand 5
A
260 265parallel
Strand 6
A
206 209parallel
Strand 7
A
179 184parallel
Strand 8
A
134 138parallel
Strand 9
A
91 97parallel
Strand 10
A
53 62parallel
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