Analysis of interatomic Contacts of Structural Units in PDB entry:
1LQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LQG entry

There are 4 chains in PDB entry 1LQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3SER 228
B
 ALA 2PRO 225
C
 THR 12LEU 84
D
 GLN 15LEU 84
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1LQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 34Right-handed alpha
Helix 2
2
A
45 51Right-handed alpha
Helix 3
3
A
52 56Right-handed 310
Helix 4
4
A
86 100Right-handed alpha
Helix 5
5
A
111 116Right-handed alpha
Helix 6
6
A
140 156Right-handed alpha
Helix 7
7
A
165 169Right-handed alpha
Helix 8
8
A
189 194Right-handed alpha
Helix 9
9
A
201 213Right-handed alpha
Helix 10
10
B
10 15Right-handed alpha
Helix 11
11
B
17 34Right-handed alpha
Helix 12
12
B
45 51Right-handed alpha
Helix 13
13
B
52 56Right-handed 310
Helix 14
14
B
86 100Right-handed alpha
Helix 15
15
B
111 116Right-handed alpha
Helix 16
16
B
140 156Right-handed alpha
Helix 17
17
B
165 169Right-handed alpha
Helix 18
18
B
201 213Right-handed alpha
Helix 19
19
C
25 34Right-handed alpha
Helix 20
20
D
25 34Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1LQG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
58 62parallel
Strand 3
A
160 164parallel
Strand 4
A
181 185parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
58 62parallel
Strand 3
B
160 164parallel
Strand 4
B
181 185parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 24first strand
Strand 2
C
41 46anti-parallel
Strand 3
C
54 60anti-parallel
Strand 4
C
67 73anti-parallel
Strand 5
C
79 83anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 24first strand
Strand 2
D
41 48anti-parallel
Strand 3
D
53 60anti-parallel
Strand 4
D
67 73anti-parallel
Strand 5
D
79 83anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il