Analysis of interatomic Contacts of Structural Units in PDB entry:
1LRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LRJ entry

There is 1 chain in PDB entry 1LRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1LRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
39 49Right-handed alpha
Helix 3
3
A
61 72Right-handed alpha
Helix 4
4
A
85 92Right-handed alpha
Helix 5
5
A
92 115Right-handed alpha
Helix 6
6
A
124 129Right-handed 310
Helix 7
7
A
147 167Right-handed alpha
Helix 8
8
A
199 209Right-handed alpha
Helix 9
9
A
236 251Right-handed alpha
Helix 10
10
A
269 281Right-handed alpha
Helix 11
11
A
303 311Right-handed alpha
Helix 12
12
A
317 332Right-handed alpha
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There are 4 sheets in PDB entry 1LRJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
26 31parallel
Strand 3
A
2 6parallel
Strand 4
A
76 79parallel
Strand 5
A
118 122parallel
Strand 6
A
171 177parallel
Strand 7
A
255 261parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
233 235parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
286 289parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
267 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il