Analysis of interatomic Contacts of Structural Units in PDB entry:
1LV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LV8 entry

There are 6 chains in PDB entry 1LV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3VAL 284
B
 ASN 1003VAL 1284
C
 ASN 2003VAL 2284
D
 ASN 3VAL 284
E
 ASN 1003VAL 1284
F
 ASN 2003VAL 2284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 1LV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 21Right-handed alpha
Helix 2
2
A
35 40Right-handed 310
Helix 3
3
A
51 53Right-handed 310
Helix 4
4
A
86 90Right-handed 310
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
97 106Right-handed alpha
Helix 7
7
A
138 142Right-handed alpha
Helix 8
8
A
167 180Right-handed alpha
Helix 9
9
A
202 212Right-handed alpha
Helix 10
10
A
221 231Right-handed alpha
Helix 11
11
A
267 279Right-handed alpha
Helix 12
12
B
1006 1019Right-handed alpha
Helix 13
13
B
1035 1039Right-handed 310
Helix 14
14
B
1051 1053Right-handed 310
Helix 15
15
B
1086 1090Right-handed 310
Helix 16
16
B
1092 1097Right-handed alpha
Helix 17
17
B
1097 1107Right-handed alpha
Helix 18
18
B
1138 1142Right-handed alpha
Helix 19
19
B
1167 1180Right-handed alpha
Helix 20
20
B
1202 1212Right-handed alpha
Helix 21
21
B
1221 1231Right-handed alpha
Helix 22
22
B
1266 1279Right-handed alpha
Helix 23
23
B
1280 1282Right-handed 310
Helix 24
24
C
2006 2019Right-handed alpha
Helix 25
25
C
2035 2040Right-handed 310
Helix 26
26
C
2051 2053Right-handed 310
Helix 27
27
C
2086 2090Right-handed 310
Helix 28
28
C
2092 2097Right-handed alpha
Helix 29
29
C
2097 2107Right-handed alpha
Helix 30
30
C
2138 2142Right-handed alpha
Helix 31
31
C
2167 2181Right-handed alpha
Helix 32
32
C
2202 2212Right-handed alpha
Helix 33
33
C
2221 2231Right-handed alpha
Helix 34
34
C
2268 2280Right-handed alpha
Helix 35
35
D
6 21Right-handed alpha
Helix 36
36
D
34 39Right-handed 310
Helix 37
37
D
51 53Right-handed 310
Helix 38
38
D
86 90Right-handed 310
Helix 39
39
D
92 97Right-handed alpha
Helix 40
40
D
97 107Right-handed alpha
Helix 41
41
D
138 142Right-handed alpha
Helix 42
42
D
167 179Right-handed alpha
Helix 43
43
D
202 213Right-handed alpha
Helix 44
44
D
221 231Right-handed alpha
Helix 45
45
D
267 281Right-handed alpha
Helix 46
46
E
1006 1019Right-handed alpha
Helix 47
47
E
1034 1040Right-handed 310
Helix 48
48
E
1051 1053Right-handed 310
Helix 49
49
E
1086 1090Right-handed 310
Helix 50
50
E
1092 1097Right-handed alpha
Helix 51
51
E
1097 1106Right-handed alpha
Helix 52
52
E
1138 1142Right-handed alpha
Helix 53
53
E
1167 1181Right-handed alpha
Helix 54
54
E
1202 1213Right-handed alpha
Helix 55
55
E
1221 1232Right-handed alpha
Helix 56
56
E
1267 1279Right-handed alpha
Helix 57
57
E
1280 1282Right-handed 310
Helix 58
58
F
2006 2021Right-handed alpha
Helix 59
59
F
2035 2040Right-handed 310
Helix 60
60
F
2051 2053Right-handed 310
Helix 61
61
F
2086 2090Right-handed 310
Helix 62
62
F
2092 2097Right-handed alpha
Helix 63
63
F
2097 2106Right-handed alpha
Helix 64
64
F
2138 2142Right-handed alpha
Helix 65
65
F
2167 2180Right-handed alpha
Helix 66
66
F
2202 2212Right-handed alpha
Helix 67
67
F
2221 2231Right-handed alpha
Helix 68
68
F
2267 2280Right-handed alpha
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There are 6 sheets in PDB entry 1LV8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 49first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
27 31parallel
Strand 5
A
110 119parallel
Strand 6
A
234 244parallel
Strand 7
A
129 137anti-parallel
Strand 8
A
188 194parallel
Strand 9
A
216 218parallel
Strand 10
A
110 119anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1043 1049first strand
Strand 2
B
1067 1072anti-parallel
Strand 3
B
1077 1082anti-parallel
Strand 4
B
1027 1030parallel
Strand 5
B
1110 1119parallel
Strand 6
B
1234 1244parallel
Strand 7
B
1129 1137anti-parallel
Strand 8
B
1188 1194parallel
Strand 9
B
1216 1218parallel
Strand 10
B
1110 1119anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2043 2049first strand
Strand 2
C
2067 2072anti-parallel
Strand 3
C
2077 2082anti-parallel
Strand 4
C
2027 2030parallel
Strand 5
C
2110 2119parallel
Strand 6
C
2234 2244parallel
Strand 7
C
2129 2137anti-parallel
Strand 8
C
2188 2194parallel
Strand 9
C
2216 2218parallel
Strand 10
C
2110 2119anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 49first strand
Strand 2
D
67 72anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
27 31parallel
Strand 5
D
110 119parallel
Strand 6
D
234 244parallel
Strand 7
D
129 137anti-parallel
Strand 8
D
188 194parallel
Strand 9
D
216 218parallel
Strand 10
D
110 119anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1043 1049first strand
Strand 2
E
1067 1072anti-parallel
Strand 3
E
1077 1082anti-parallel
Strand 4
E
1027 1031parallel
Strand 5
E
1110 1119parallel
Strand 6
E
1234 1244parallel
Strand 7
E
1129 1137anti-parallel
Strand 8
E
1188 1194parallel
Strand 9
E
1216 1218parallel
Strand 10
E
1110 1119anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2043 2049first strand
Strand 2
F
2067 2072anti-parallel
Strand 3
F
2077 2082anti-parallel
Strand 4
F
2027 2030parallel
Strand 5
F
2110 2119parallel
Strand 6
F
2234 2244parallel
Strand 7
F
2129 2137anti-parallel
Strand 8
F
2188 2194parallel
Strand 9
F
2216 2218parallel
Strand 10
F
2110 2119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il