Analysis of interatomic Contacts of Structural Units in PDB entry:
1LVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LVB entry

There are 4 chains in PDB entry 1LVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8PRO 221
C
 THR 301THR 310
B
 PRO 8PRO 221
D
 THR 301THR 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1LVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
44 49Right-handed 310
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
185 192Right-handed alpha
Helix 5
5
A
193 196Right-handed 310
Helix 6
6
B
11 16Right-handed alpha
Helix 7
7
B
44 49Right-handed 310
Helix 8
8
B
68 72Right-handed 310
Helix 9
9
B
185 192Right-handed alpha
Helix 10
10
B
193 196Right-handed 310
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There are 3 sheets in PDB entry 1LVB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
53 59anti-parallel
Strand 3
A
18 25anti-parallel
Strand 4
A
28 37anti-parallel
Strand 5
A
40 43anti-parallel
Strand 6
A
83 86anti-parallel
Strand 7
A
73 76anti-parallel
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There are 24 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
177 181anti-parallel
Strand 4
A
163 171anti-parallel
Strand 5
C
304 306anti-parallel
Strand 6
A
214 217parallel
Strand 7
A
208 211anti-parallel
Strand 8
A
214 217anti-parallel
Strand 9
C
304 306parallel
Strand 10
A
163 171anti-parallel
Strand 11
A
154 157anti-parallel
Strand 12
A
109 116anti-parallel
Strand 13
A
120 125anti-parallel
Strand 14
B
120 125anti-parallel
Strand 15
B
108 116anti-parallel
Strand 16
B
129 133anti-parallel
Strand 17
B
139 142anti-parallel
Strand 18
B
177 181anti-parallel
Strand 19
B
163 171anti-parallel
Strand 20
B
154 157anti-parallel
Strand 21
B
163 171anti-parallel
Strand 22
D
304 306anti-parallel
Strand 23
B
214 217parallel
Strand 24
B
208 211anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
53 59anti-parallel
Strand 3
B
18 25anti-parallel
Strand 4
B
28 37anti-parallel
Strand 5
B
40 43anti-parallel
Strand 6
B
83 86anti-parallel
Strand 7
B
73 76anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il