Analysis of interatomic Contacts of Structural Units in PDB entry:
1LVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LVC entry

There are 6 chains in PDB entry 1LVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 292ASP 798
B
 ASP 294ASP 798
C
 ARG 292ASP 798
D
 THR 5ALA 147
E
 THR 5ALA 147
F
 THR 5ALA 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 88 helices in PDB entry 1LVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
298 306Right-handed alpha
Helix 2
2
A
308 322Right-handed alpha
Helix 3
3
A
335 341Right-handed alpha
Helix 4
4
A
367 371Right-handed 310
Helix 5
5
A
376 393Right-handed alpha
Helix 6
6
A
406 417Right-handed alpha
Helix 7
7
A
500 506Right-handed alpha
Helix 8
8
A
511 518Right-handed alpha
Helix 9
9
A
522 538Right-handed alpha
Helix 10
10
A
550 568Right-handed alpha
Helix 11
11
A
579 583Right-handed 310
Helix 12
12
A
607 619Right-handed alpha
Helix 13
13
A
647 654Right-handed alpha
Helix 14
14
A
659 669Right-handed alpha
Helix 15
15
A
695 705Right-handed alpha
Helix 16
16
A
706 710Right-handed 310
Helix 17
17
A
713 737Right-handed alpha
Helix 18
18
A
744 768Right-handed alpha
Helix 19
19
A
773 779Right-handed alpha
Helix 20
20
A
787 797Right-handed alpha
Helix 21
21
B
298 306Right-handed alpha
Helix 22
22
B
308 322Right-handed alpha
Helix 23
23
B
332 341Right-handed alpha
Helix 24
24
B
367 371Right-handed 310
Helix 25
25
B
376 393Right-handed alpha
Helix 26
26
B
408 416Right-handed alpha
Helix 27
27
B
501 506Right-handed alpha
Helix 28
28
B
509 518Right-handed alpha
Helix 29
29
B
524 538Right-handed alpha
Helix 30
30
B
550 566Right-handed alpha
Helix 31
31
B
579 583Right-handed 310
Helix 32
32
B
607 619Right-handed alpha
Helix 33
33
B
647 652Right-handed alpha
Helix 34
34
B
713 728Right-handed alpha
Helix 35
35
B
729 731Right-handed 310
Helix 36
36
B
742 765Right-handed alpha
Helix 37
37
B
785 791Right-handed alpha
Helix 38
38
C
297 306Right-handed alpha
Helix 39
39
C
308 322Right-handed alpha
Helix 40
40
C
335 341Right-handed alpha
Helix 41
41
C
367 371Right-handed 310
Helix 42
42
C
376 393Right-handed alpha
Helix 43
43
C
406 417Right-handed alpha
Helix 44
44
C
500 506Right-handed alpha
Helix 45
45
C
511 516Right-handed alpha
Helix 46
46
C
521 537Right-handed alpha
Helix 47
47
C
550 568Right-handed alpha
Helix 48
48
C
579 583Right-handed 310
Helix 49
49
C
607 619Right-handed alpha
Helix 50
50
C
647 652Right-handed alpha
Helix 51
51
C
653 656Right-handed 310
Helix 52
52
C
660 670Right-handed alpha
Helix 53
53
C
695 705Right-handed alpha
Helix 54
54
C
706 710Right-handed 310
Helix 55
55
C
713 737Right-handed alpha
Helix 56
56
C
744 766Right-handed alpha
Helix 57
57
C
773 779Right-handed alpha
Helix 58
58
C
786 797Right-handed alpha
Helix 59
59
D
7 10Right-handed 310
Helix 60
60
D
11 17Right-handed alpha
Helix 61
61
D
31 37Right-handed alpha
Helix 62
62
D
44 56Right-handed alpha
Helix 63
63
D
64 76Right-handed alpha
Helix 64
64
D
77 80Right-handed 310
Helix 65
65
D
81 93Right-handed alpha
Helix 66
66
D
101 111Right-handed alpha
Helix 67
67
D
117 129Right-handed alpha
Helix 68
68
D
138 144Right-handed alpha
Helix 69
69
E
7 10Right-handed 310
Helix 70
70
E
11 17Right-handed alpha
Helix 71
71
E
31 37Right-handed alpha
Helix 72
72
E
44 56Right-handed alpha
Helix 73
73
E
64 76Right-handed alpha
Helix 74
74
E
77 80Right-handed 310
Helix 75
75
E
81 93Right-handed alpha
Helix 76
76
E
101 111Right-handed alpha
Helix 77
77
E
117 129Right-handed alpha
Helix 78
78
E
138 147Right-handed alpha
Helix 79
79
F
7 10Right-handed 310
Helix 80
80
F
11 17Right-handed alpha
Helix 81
81
F
31 37Right-handed alpha
Helix 82
82
F
44 56Right-handed alpha
Helix 83
83
F
64 76Right-handed alpha
Helix 84
84
F
77 80Right-handed 310
Helix 85
85
F
81 93Right-handed alpha
Helix 86
86
F
101 111Right-handed alpha
Helix 87
87
F
117 129Right-handed alpha
Helix 88
88
F
138 147Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 1LVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
602 605anti-parallel
Strand 3
A
593 596anti-parallel
Strand 4
A
324 328anti-parallel
Strand 5
A
494 499anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
484 489parallel
Strand 3
A
475 481anti-parallel
Strand 4
A
398 402anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 426first strand
Strand 2
A
431 436anti-parallel
Strand 3
A
442 447anti-parallel
Strand 4
A
453 457anti-parallel
Strand 5
A
472 473anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 542first strand
Strand 2
A
548 549anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 499first strand
Strand 2
B
324 328anti-parallel
Strand 3
B
594 596anti-parallel
Strand 4
B
602 604anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
484 489parallel
Strand 3
B
475 481anti-parallel
Strand 4
B
398 402anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 426first strand
Strand 2
B
431 436anti-parallel
Strand 3
B
442 447anti-parallel
Strand 4
B
453 457anti-parallel
Strand 5
B
472 473anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 542first strand
Strand 2
B
548 549anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
494 499first strand
Strand 2
C
324 328anti-parallel
Strand 3
C
593 596anti-parallel
Strand 4
C
602 605anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
344 345first strand
Strand 2
C
484 489parallel
Strand 3
C
475 481anti-parallel
Strand 4
C
398 402anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
420 426first strand
Strand 2
C
431 436anti-parallel
Strand 3
C
442 447anti-parallel
Strand 4
C
453 457anti-parallel
Strand 5
C
472 473anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
541 543first strand
Strand 2
C
547 549anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 28first strand
Strand 2
D
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 100first strand
Strand 2
D
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 28first strand
Strand 2
E
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 100first strand
Strand 2
E
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 28first strand
Strand 2
F
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
99 100first strand
Strand 2
F
136 137anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il