Analysis of interatomic Contacts of Structural Units in PDB entry:
1LVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LVH entry

There are 4 chains in PDB entry 1LVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1PHE 7
A
LEU 9LYS 221
B
MET 1PHE 7
B
LEU 9LYS 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1LVH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
16 31Right-handed alpha
Helix 2
2
A
40 45Right-handed 310
Helix 3
3
A
48 58Right-handed alpha
Helix 4
4
A
65 84Right-handed alpha
Helix 5
5
A
85 87Right-handed 310
Helix 6
6
A
88 92Right-handed 310
Helix 7
7
A
95 106Right-handed alpha
Helix 8
8
A
118 126Right-handed alpha
Helix 9
9
A
128 132Right-handed 310
Helix 10
10
A
137 141Right-handed 310
Helix 11
11
A
148 158Right-handed alpha
Helix 12
12
A
161 163Right-handed 310
Helix 13
13
A
171 182Right-handed alpha
Helix 14
14
A
190 195Right-handed alpha
Helix 15
15
A
203 207Right-handed 310
Helix 16
16
A
208 218Right-handed alpha
Helix 17
17
B
16 30Right-handed alpha
Helix 18
18
B
37 43Right-handed alpha
Helix 19
19
B
48 58Right-handed alpha
Helix 20
20
B
65 85Right-handed alpha
Helix 21
21
B
86 87Right-handed 310
Helix 22
22
B
88 92Right-handed 310
Helix 23
23
B
95 106Right-handed alpha
Helix 24
24
B
118 126Right-handed alpha
Helix 25
25
B
128 132Right-handed 310
Helix 26
26
B
148 157Right-handed alpha
Helix 27
27
B
161 163Right-handed 310
Helix 28
28
B
171 182Right-handed alpha
Helix 29
29
B
190 195Right-handed alpha
Helix 30
30
B
203 207Right-handed 310
Helix 31
31
B
208 218Right-handed alpha
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There are 2 sheets in PDB entry 1LVH. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
134 135first strand
Strand 2
A
109 112parallel
Strand 3
A
4 7parallel
Strand 4
A
165 169parallel
Strand 5
A
184 188parallel
Strand 6
A
199 201parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
134 135first strand
Strand 2
B
109 112parallel
Strand 3
B
4 7parallel
Strand 4
B
165 169parallel
Strand 5
B
184 188parallel
Strand 6
B
199 201parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il