Analysis of interatomic Contacts of Structural Units in PDB entry:
1LVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LVM entry

There are 5 chains in PDB entry 1LVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -8PRO 221
B
 SER 3PRO 221
C
 GLU 302GLN 307
D
 GLU 302GLN 307
E
 GLU 230ASN 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1LVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 4Right-handed 310
Helix 2
2
A
11 16Right-handed alpha
Helix 3
3
A
44 50Right-handed 310
Helix 4
4
A
68 71Right-handed 310
Helix 5
5
A
185 192Right-handed alpha
Helix 6
6
A
193 196Right-handed 310
Helix 7
7
B
11 16Right-handed alpha
Helix 8
8
B
44 49Right-handed 310
Helix 9
9
B
68 71Right-handed 310
Helix 10
10
B
118 121Right-handed 310
Helix 11
11
B
185 192Right-handed alpha
Helix 12
12
B
193 196Right-handed 310
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There are 4 sheets in PDB entry 1LVM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
232 233first strand
Strand 2
A
62 66parallel
Strand 3
A
54 59anti-parallel
Strand 4
A
18 25anti-parallel
Strand 5
A
28 37anti-parallel
Strand 6
A
40 43anti-parallel
Strand 7
A
83 86anti-parallel
Strand 8
A
73 76anti-parallel
Strand 9
A
198 200anti-parallel
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There are 15 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
177 181anti-parallel
Strand 4
A
163 171anti-parallel
Strand 5
C
304 306anti-parallel
Strand 6
A
214 217parallel
Strand 7
A
208 211anti-parallel
Strand 8
A
214 217anti-parallel
Strand 9
C
304 306parallel
Strand 10
A
163 171anti-parallel
Strand 11
A
154 157anti-parallel
Strand 12
A
108 115anti-parallel
Strand 13
A
129 130anti-parallel
Strand 14
A
108 115anti-parallel
Strand 15
A
122 125anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
53 59anti-parallel
Strand 3
B
18 25anti-parallel
Strand 4
B
28 37anti-parallel
Strand 5
B
40 43anti-parallel
Strand 6
B
83 86anti-parallel
Strand 7
B
73 76anti-parallel
Strand 8
B
198 200anti-parallel
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There are 15 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
108 114anti-parallel
Strand 3
B
129 130anti-parallel
Strand 4
B
108 114anti-parallel
Strand 5
B
154 157anti-parallel
Strand 6
B
163 171anti-parallel
Strand 7
D
304 306anti-parallel
Strand 8
B
214 217parallel
Strand 9
B
208 211anti-parallel
Strand 10
B
214 217anti-parallel
Strand 11
D
304 306parallel
Strand 12
B
163 171anti-parallel
Strand 13
B
177 181anti-parallel
Strand 14
B
139 142anti-parallel
Strand 15
B
132 134anti-parallel
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